G133669


Basic Information

Item Value
gene id G133669
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7509749 ~ 7519294 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU167661
CTGGTCCCTCGGTCCCACAGCTTCACACTCTGGTCATGTGATGCCGAGATGATGGTTCTCTCCGTTACCTTCAGCACGCTGATCTGGTCTGTGTGGGCCTGTGAGACACAGAGTCACACTCAACCAGCTGTGTGGATTGTAGATATACACCTGGagaacacacactgtactgtatatatacacttggagtacacacactgactggaccCCCTGTTCggtactgaatatatatatatacacacacctgaTGCACAGATACATACAGGACACACCATATATACATCTATAGAGCTGCTGCATATACTGTATACCTATATGTATAAAGTGTGGACACAAACACCTGCTGTGTACTTATTAGAACCACTACAGTTCTCCTACCTGCTTCTTGCTAATCCAACCCTTCTCATCTGGGAGAGCCTTGTACCAAATATTCCCACTGGAATCACCACACACCAGCACATCTGcatcaagagagagagagagagatgttacTGGTTGGACCACCCCAACACAGAGGTCTATGAAGCTGAAGGTCAACCAGAGCTCATTTCGGCCTAGACTTGCTTGACTGCGGGAACGATTACCTAGCCCTCCCCCTTCCTTACCACTAGATGGAATGAGCTGCTGCTCAAGACTCGGGGGACGGTTAGCCTTTTTGATTTACAACATGCAGGAACTCCGATAAGGACTAAATCCTGCCTCCCTTGAACACAGGTTGGCCATGAGCTTTACCTTGATGAATGGTGGCAGCCGTGGTCCAGGAGCTCTTGTCAGTGTCTGAACTCTCGTGCTGATCCAGGTCCAAGGTGTTGAACGCGTTAGAGGTTATCCCCATGGCGAACTGAAATAAGACGAGAGAAGAGTCCCCATTGCTGTTGCagctattgttattgttactctATCCATTACTGTTCTGTACCTTTATCTGTTAATGTTGGTTTATCTGCTCCCCCATCGTTTCTGTAACTTCAACTGTTACCACCACTGCTATGGTTTTCCAGTTACTGTAACTTCATCCATTACTGTTACTTTATAAGTTCCTGCCACTGTGGCTTTATCCATTAGTGCTACTGTAACCGTTTCCATTCCTGTAGCTGCTGCTGCCACAGTTGTAGCTTCACATACCCTAAACCTTAAAGCCAGACTTGTTGACCCATCTGTACTCCGCTAAGTAAGGAAACAAGATTCAGAAGAATAAGAAAGTACTCACAGCGAAGCCCACTTCTAAGGTACAATCGTCTGCCGCAACCAACCACAGGCTCTTGCTGTCATTCTCTTGTATTCCAAGGATGTGAAAGCTGTCCATCCAGCTGGaatacagatgtttatttaatcatttatgaaACCTCTCACACCTTCATTTTTAATCACTGTACATTTTCTGAGGATAATTGATATTTTTATCATATTGGGCATATTTTGATACACTATGGTATGGATTGTCAAAACCACATCAGATgaagtcatttaaataataagaatCAGAACAACTGCCCTACCGCTGTCAGCCCTTATGACTGACTCTCTCTATGcacccctctccttctcccttcaaCCACCGCCTTCTGCTTCTCTTTCATCCTCACTCCCTCCCATTTTTCTCTCATCATCTGTCCTTCCCTCTTTCTGTGCCCCAGAcgtctctctcttgctctctctcagaTACTATATATTCATGTAACTATCCATCCGCTACAGCTCAATCTCTTCATTGTCTCAGAGAAGAGTGATGCATACTCAATGGAAATATGCATGGGATCCATCGTGTGAATGATGCTGCCATTAGCGCAGGCTCCCAACAGCACACAGGAGTAGTGCAGGAAGAGCACGGAGGAGTCCACAGGGTAGGAAGACAGCGGCTTAACCctgagaaaggagagagagggggggtgagagagagtgattgagaggggaggggggtgagagagtgagtgagagagaggagggggaaatGAGAAAGATAGGAGTCCCCCTCCCAGTTTGAGCTAGATGCTCCTTTTGTGCTCACTGTGCTGTGGTCTGTGGAGGCGTCCACTCCAGTCTCCATGTGGTCACCGTGTTGTCCAAACAGGCCACTGCAAACTCCCTCTCTGACATGAACGCCACAGAGCTGACCAAACAGTCACTGACCTGCAGCGAGGGACACAATCAGGGTCACGGTTGAGCAAGGGACTGACAGCGGGTGAAGAGGATTACAATGACCACTAATTagTGTCCATGTGCACGTGCGTGTCCTAGGTGTTTCTCGGTTACCTGCATGCTGCAGATGACAGAGTTCTGGTGCCATATGCACAGCTGGCCCTGCCCGTGCCCAGACACCAGCAGCTGCCCACAGGGGGAGAAGCACAGAGCCGTGGTGCCCCCCTTCTTGGAGACTGGATTTTctgcacagaacagcacagatgATTAGAGCCTGgtaaaataactacatttaCTATGGAAAATACTAAACTGTTAATATGAAGTGGGACATTTGTGGTAGGTTAATAACTTATGTCCTTATGGTGTAtttagtatgtatatatacataattacagTGTGGGGCAATGTGTTGCCTATGCTATGGTGTatctatacatgtattaatttaacaacaTAAGTACTTATGTGCATCTATGTGTTGTATTTACCCAGTTCTTACAGCACAAAGTATTATACAGTGTTACCATacactgaaattaaaagcaAGCAGAAGCCTGTTCCGAACTAGTGGAGGACAGAACTGCATGACTGATTGCTATTTTTGGTTGGCGTCTTAAAGTGACAAGGCTTATCCGCTTTGCTGGATTGTTACCAGTGAGGTCAGAGATCAGAGGTGGCGTTATTATTTACCCATCGCTGTGGAGATGCTCCAAGCTCGCATGGTGCGGTCTTCGGCCACCGTGAGGAACGCCGGTACTTCTTCCTCGGGAGCTGAGCCGCGTATCACTCCGCTGTGGTCCGACAGTGAGCCGCGGTTCTCCACCTACACAGAGGGAGGATCAGTGGATTACACTGGTTTCAGCTGTGATGCAATTACATATTTCATACTAGTATTCTatgtttaattacatatttttttagtttgttattaACACTTGTTGCAGTGTCATGGCTAATGTAATTGCCAGCATTATAAAGCATTTTTCCTCTTGTTAATGAGACAATCCTGCGTTAGGGTCCTAGCCACCCCGAGGATAGCAGGTCACCCTCTCACCTGCAGGGGGAGCCACAGCTGCACCGTCCCATCGTCAGACGCTGTGGCAACAGCAAGATCCTCGGACTTGTCATCTTGGGGAGCCATAGAAGTGCTGAGGAGGTGTGGAGCTGGGGCCGTCGACGTGGATTCAGAAGCAGCTGCTGCTTTAGATAATTGCATGCCGTCAGCTCACAATCAAGAAGGAACAAAGCGAATGCTTACCAGAGTGCCAGTAGGCGGTGCAGTGGTGTATCCTGGCCGAGTGAGCTGGGATCCGGGTGACTTCCACTCCCGATTCCCACTGCCACACTGCAAGCTCCCCGCTGCCTGAGCCCGCCAGCACATACTCACCCTGAtgtcaacaaacaaacaaagacaaccGTCAACCACTCCAAACAATGGCAAGGTCAACAACTTGATCTGGTCTTGGCTGCAGAGTGAATTCTTGGACAGAAAATCATATCAggacaactactactaataggGGAATCAACTCAAGCACAATGACTTAGGCCCGTCTCAAGGACTCACCAGACTGCACACTGAGCTCAGGGGGGAGTCCTGCCCCACAAACTCCCTGAAGCACTGGCCAGATGCAGGGTCCCACACTCGCACCAGGCAGTCATTGGAGCAGCTCACCTGTCACAGGAgacaagagagggagagagtgagagagtgtgagtgagtattaatatattttataccaGCAAGACAACTTAGAAATGTGAGTGTAATTATACACATGACGTGATATCAGTTCTGAGACAAAATTCCACAATTTTAAAAGATATGTATCGAACGTAGAGAGCTGTAAATGTATCTATCTGTCCATCCCGTGGCCTATGCATCCCTCCATCCAGCTCCTCACCAGGGTGCTCTCAGTCCAGGTGCAGCCGGTGATCCAGTCAGTGTGGCAGTGCAGGAAGGAGCGCGACAGACGTGGGGGAGACGCACTTACATCCCACACTAGCAGAGACTGTGAATGAGAGAACCAAACAAACAACCCCCTGAGAAACGTCTGCAACTCCGTCACGAACATGCCATCGCCGTTTGAAAGCTTAACAAAATACAAGAGAGACTCTAAGGCCTAGATAAGAGCCAAACATTACCCTGTCTGTGAATCCCGAAGCACATAgcccaggggtagtcaattattttgtgtcagtccaaatttcttggtcaaggtatattcaaggtccagacatcagggggggggggaaatcacaccttcaaatgatcgtttccatcacacacacaattctgtgaattagtaatatacctagttgcttatatttagtacattaatttgacaaagtacaaaaataaaacgtttatatcaatgtaaatattagtagtAAAACTGTTTCAGACcactttaaattttaatttgttaaagatttttgtaggcatataaacataatataaactttcaagcattttgtatgttattagattcaagtctatACCATTTACCCTTTGCCCCACagcacaaaattaatgttgaaaaatgaggaCATGATGGTAAATCAGGGCGGGGGGTCTGGTGGTCCTCCCCCAACAGATTTTGACAATTGAagacctgaaatgcgcgattcTGCGTTATTTCGAAGTCGaaaaacatagctcaaaatcttggacatatctttgcttcacaaccgcatatcaccagtgaaaaatcacacatcaaccgacattGACAAGCACCAGGAACCTAGTTTGCTGCACAATCACAGTTCTATTTTGGTGGGTCTCTGAAATTGaatgggtgaggatgcacaagtccctgctagaaatatgcatcttcattggaaatcagctgtttccgccgctgatataggagtttctaggtgaacacaagcaATGGCCCCGGTCAtgtgtgcacttttatattttggaggcgaggttgaaatatgtccacatgaCAAACGATCCAcagtttatctgtttatttatagaaatcaggaaaacaaaccaaataccttttttgttttttgtatttttgttttttgaggagTACAAAGAgacgctcttgccccagtccagaatatgtaggcagcactgtggataGCAAATGgaggttagggctctggactcataactggaaggttgtgggttcaaatcctgggtgggccaatgctgttgtactcttgagcaaggtacttcacttagactgctccagtaaaatgcccagctgtataaaNNNNNNNNaatgtaagttgccctggataagagcatctgctaaatgacaaataatgtaatgtacagaGATGCCGAATCTggaatctgcgagcaatcaactAACAGGAACATGAGCTCTATATATAAGCTCTCACCTACTGCTGtttcaaccacactgcaccaagttaccttcagacacttctctccatacatcccctccagaccactgtggtcttccagtgccagaaaactaactctgcctcctccttGTAATAGCAGTTTtattaatccctgttagatagcacttcacagagctTTATTATGCTTCtggtgtttttgattgttttcctccttgctcccttcaCCTTGACTGTGACATCTtgactcagcttttacaatccaggatgtaagacctcatatattgtatattggcGAATAGCCAGGAAGGGCTACTACtgggttccacacaataacaagaagtgcaacaaacctctgtaacattacatacaaaataataataataagttaattaaaattattctcgcgGTCCAGTCAAAAGTGTCTGGCGGTCCTGATTTGGGGTATTGACTACCCCTGACATAGCCTGACATCTGTTTTATGTATAAATACTAGAACATTTCAGAATTCCCGCTCAGTCGAGATCTGACCAATTCACCATCAtagagaattaaaataaagtatttcaataattaaattattttatgtggTTTTGTCTCATGTATGTATGCTTCAGTTTACAAAGTTAAACCACTTGCTCATCAATCAGGGCAAAATCCAAACCAAAATGTTGCCTTCAACAccctttttttttatacatagtAGAAAATGCCATCTGCCAATAAGTTAAACTATGATACAGGTTTGTAATGTGCAGCTTATGGGCAGGGCAACGTTATGATTCAGGCCCAccttaagaacataaagtttacgaacgagtgtccattaataactgagtgatccaaggatcctatccagtctatgttctagagcagcgatatccttcttgaagtgtggagcccagaactgcacacagtatccagatgagctctaactagtgcatttgacagtctgaacattactgcccttgttctcaattctacacttttgacaatataccataacatcctgtttgcctttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcgtgtattaccttgcacttgtccacattgaaattcatctgccaggtgtcggcccacaactgaatattatcgaAGTCTCTtcgaatagcctgtgctgcagagattgtatctgctgagccaccgaTTTTggtatctgcaaatttgacaagtttgctaactatcccagagtcgagatcatccctgtggaactccactaacaacctcactccagttagaagcaactcctctaattgacaccctctgcttcctacacatcaaccagtttataatccatctacttacattaccctgaatgcctacagcttccaattttggtaggaaccttgtcaaaatgtatctgaaaatctatgtatatcatatgctttcacatgatctacagctgcagttccatgttcaaaaaattcgaataaattagtaagacatgatctgcctcgtctaaacccatgttgaccatctccaagaatatggttttcattaagatgctcctctattttctgtccaatcattttttccaacattttaaaggtgatgcaggtgagactgattggtctgtaatttcctggctctgttttgtcccctttcttgtggattggtatgacatttgcagtcttccagtcagttggcacatcctctgttctaagtgtcatttggaatatttgagttagcggcctataaataatttccctcatttctttaagtactgttggaaatataccatctggcccaggtgatttgctTTTAGTTCtactagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactgattgttgacctgtggcatgttatccattttttcctttgtaaaaacctctgtgaaatactcatttagaacatttgccacatcttgttagtcTTTTTTgctctttatctgtttcacttcctaccttattgacctcttgctgttgtaatactgaaaaaagctctttgcattagttttagctccaagagctctgtttctttctatttccctctttggtttcctgatccctttcttaaggtctctttgcagctcaacatattctatgtattttgtttagtctcgatcccttttgtatgcactatacaacattttctctattgatattttttgcatacctctattaaaccattttggccaacatttttggtcctcaatttgctaaaatttggtacaaatttctccgtagtagtagtatattcttaaaatataaccatccgttttcaactgactcttctaagtgccgcctcataccttcaagatttgcttttctaaaattgtgaccattgttttagacttggaccttgtgttttgaaagaatgcctcaaagctaaccatgttgtgatcacagtttgctattggttctctaactagtgttcCTCTGACTATCTtggtcaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167661 True 8069 lncRNA 0.43 5 7509749 7519294

Neighbor

gene id symbol gene type direction distance location
AMCG00011960 NA coding upstream 28119 7471715 ~ 7481630 (+)
AMCG00011961 NA coding upstream 58078 7441388 ~ 7451671 (+)
AMCG00011962 NA coding upstream 125779 7382975 ~ 7383970 (+)
AMCG00011963 NA coding upstream 136214 7371184 ~ 7373535 (+)
AMCG00011958 NA coding upstream 148685 7346950 ~ 7361064 (+)
AMCG00011968 NA coding downstream 58062 7577356 ~ 7578348 (+)
AMCG00011972 NA coding downstream 80214 7599508 ~ 7683253 (+)
AMCG00011977 NA coding downstream 175719 7695013 ~ 7754715 (+)
AMCG00011976 NA coding downstream 259932 7779226 ~ 7782991 (+)
AMCG00011975 NA coding downstream 266556 7785850 ~ 7788725 (+)
G133642 NA non-coding upstream 154784 7354370 ~ 7354965 (+)
G133617 NA non-coding upstream 295287 7214235 ~ 7214462 (+)
G133583 NA non-coding upstream 390899 7118297 ~ 7118850 (+)
G133574 NA non-coding upstream 396682 7112364 ~ 7113067 (+)
G133577 NA non-coding upstream 413822 7095554 ~ 7095927 (+)
G133681 NA non-coding downstream 25989 7545283 ~ 7556712 (+)
G133682 NA non-coding downstream 27350 7546644 ~ 7547755 (+)
G133665 NA non-coding downstream 32001 7551295 ~ 7575165 (+)
G133783 NA non-coding downstream 311270 7830564 ~ 7843471 (+)
G133820 NA non-coding downstream 483486 8002780 ~ 8003512 (+)
G133667 NA other upstream 998 7505082 ~ 7508751 (+)
G133619 NA other upstream 267449 7236941 ~ 7242300 (+)
AMCG00011948 NA other upstream 369617 7135868 ~ 7140132 (+)
AMCG00011917 NA other upstream 856018 6644876 ~ 6653731 (+)
AMCG00011909 ccnb1ip1 other upstream 949087 6545388 ~ 6560662 (+)
AMCG00011971 NA other downstream 40369 7559663 ~ 7575192 (+)
AMCG00011987 NA other downstream 405842 7925136 ~ 7928238 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 441404 7960698 ~ 7976097 (+)
AMCG00011993 NA other downstream 508769 8028063 ~ 8037681 (+)
G133822 NA other downstream 532830 8052124 ~ 8055021 (+)

Expression


Co-expression Network