G133961


Basic Information

Item Value
gene id G133961
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8449043 ~ 8578268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU168067
aaaagggaaaaagtatgtaaaaaagTTAACTATAAAGTTAACTATATAAATTTAATAAAGTTTACTATACATCAGGTTCATTTATAacttatgaaaacattttacaaggtatttgaaataaatctgCATTACTGTGTAAGCTTgtattttgattacattttacattgtgaGCACTGTAAACAGATTAAACATTCTAGCTATATGTAAATCTATTGTAAATGTAAGGTTTTCAAATAGTTTACCATGACCATTTAAACATATGTAAAGCAAAGGTTTTTAACTGGTTCacaaatgtactgaatttgTACACCATTAGTTTAATGTAGTGGGCCATCACATTAAGTAAGTGAAACCTGATggtcttttttatattattattattagtagtagtagtagtatactttatttaaaaaggttttacaAGTAATGTCAcagtctaattttaaatattacttaaaTTATAGCAGTTAAAGCTAGTATGTATCTATTGCCCAGGCTTTATTGTGTTATACAAACTCTGTTCAGAAGATATGATTGTTTTGGGTCACagggatacatttttttcctccactgCGTCGTAGgcaaaaaagtttgaaaaccacttaTCTAGAGAGCACTTATCTGCATCACTGTTCGtcccactgaaataaataaaactacttAAAGATTACAAGCAGCCTCCTCTTTTCAGGATACTAGAATAATGCCTAGATGTTTCTATTAAGAAAGTAGCTTGAATTGCAAACCATCAATATGTCAGTCATACAAATGTGATCAGAGGAACCCAGCACCAAATAGTTTTATTGTAGTTTAACTGAAGGTAATTTTGTGACATCCAGATTTTATATCTGGTACATatctacatacacacatctgcATTACATTGATAATTCTGGCCAGAAAAATGAAATTCTGGTCCAAGTGGGGtcaagaaaattatataaagaAGAGGTCCCAGAATTGAGCCCTGAGGGACTCCAGAGGTTACCAGCCTAACCTTTGATTAAGATCCTCTGAGGATATTAATTGCTGACAATTTATGAAGTATGAAGTTTATCATGTAGAATGTCATGTTTCACTGCGTCGAAGCAGCTGTGAGGTCCAGCTGAATTAAAATCAATAGGGAGTCTGCATCTGCAGAATCTGAGTATCATTTACTATCTTAATTAAGGCTAGTTCAATGCTGTGAAAATTCctaaatgtgaaacaaaaatattcaaaaagttGATCTGCATTCAGTGCTTATACAATTGCAAAGCTACAGCACAATCACGTATGGATGTTACAAGTTCATCCAGCACATTTAGCACATTTAGCCTCCCATCTTATTATATGCCAAACTCTGTGTTTGCTGTTGATCAAgtttcttcaaataaataaatattattgttctATTACATGTCTATTAAATCTGCTGTTTGTATGGCTCTGTCATTTTCTTAAATGGGGACTTTCCACTTCATTTATTAGAGTCCCTACagacaatatgtattatttatattttgactCATTAACATGGGGAAGCTTTATTACAAAAGTCTGGTCAACTGAATGTGTTAGGAAATGCTTTATGCATATACGATTGTTTGAAAGACCTGTGAGCAAAACACTGATCATTTAGATTTCTTCAGCAGATTCTTCATTTTCATCCCAAACCTTCCCTGTCAGACAGACTTGCGGTGTGATGTGTGTCAGTTAATCTCCTGAATAGGCTTTGCCTTCACAATCAGTTTCACTGCTTTgctgttttgtgattttatcTTGCTTGTCCTGTGGACTGGTTGGAAGATGTCATTGTATTCACAGGAGATATTGTGAGTGTTTTTTTACATGGTGGGAAGGTTCCAAAACATGGATACAAAACCTCTTTTTTTTCAGTGGTGATAGTGAAAGTGTAGATATGAGACCTGGTCTCCACATTGTAGAAGGAGACCTGCCCCTCGTCACAATCCACAAACACCCCCACCTTCTGGGGCTTCAGGCTCAGGGGCAGTAGGATCACTGGCTGTGTGGAAGTGTTCAGTTTGTTATCTATCAAACTCAATCCCCAGTATCCTCTTTCAGGGAGAAGGGCTACATTCCCATCCCTTTTAGCAGATTCTCTGGTCACTCCCACATACCAGTCAGTCTTCTCCACGACACCTCCCAGTAGTGCCTCCCTGAGCTGAACCCTGTCTTGCCCAGGACACAGAACTGCTGTTCAAATCTCTGTCCATTGTCTGAgatgctctgtctctctcccagagTCACAGATTTCCCATCTTCAGACACTCTGGGTCGGTTTTGTGCTGTTTCAGGGTCTAGAGTCACATCAGCTGGCGAGTGGAAAAAC

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU168067 True 2332 lncRNA 0.37 3 8449043 8578268

Neighbor

gene id symbol gene type direction distance location
AMCG00012004 NA coding upstream 20363 8426020 ~ 8428680 (+)
AMCG00012005 NA coding upstream 47840 8398026 ~ 8401203 (+)
AMCG00011994 NA coding upstream 423982 8020804 ~ 8025061 (+)
AMCG00011992 NA coding upstream 432156 7999228 ~ 8016887 (+)
AMCG00011985 NA coding upstream 494030 7931795 ~ 7955013 (+)
AMCG00012010 NA coding downstream 8862 8587130 ~ 8587981 (+)
AMCG00012011 NA coding downstream 16748 8595016 ~ 8601876 (+)
AMCG00012016 NA coding downstream 92221 8670489 ~ 8670824 (+)
AMCG00012015 NA coding downstream 100636 8678904 ~ 8698447 (+)
AMCG00012014 NA coding downstream 148555 8726823 ~ 8730941 (+)
G133947 NA non-coding upstream 172463 8276375 ~ 8276580 (+)
G133921 NA non-coding upstream 252014 8196819 ~ 8197029 (+)
G133833 NA non-coding upstream 324344 8120899 ~ 8124699 (+)
G133825 NA non-coding upstream 331794 8062593 ~ 8117249 (+)
G133832 NA non-coding upstream 348606 8079755 ~ 8100437 (+)
G134018 NA non-coding downstream 41239 8619507 ~ 8623220 (+)
G134019 NA non-coding downstream 45950 8624218 ~ 8627183 (+)
G134033 NA non-coding downstream 121143 8699411 ~ 8700618 (+)
G134034 NA non-coding downstream 124081 8702349 ~ 8702598 (+)
G134035 NA non-coding downstream 125481 8703749 ~ 8703968 (+)
AMCG00012006 NA other upstream 52002 8378333 ~ 8397041 (+)
G133822 NA other upstream 394022 8052124 ~ 8055021 (+)
AMCG00011993 NA other upstream 411362 8028063 ~ 8037681 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other upstream 472946 7960698 ~ 7976097 (+)
AMCG00011987 NA other upstream 520805 7925136 ~ 7928238 (+)
AMCG00012043 NA other downstream 701720 9279988 ~ 9309931 (+)
G134291 NA other downstream 1073081 9651349 ~ 9653234 (+)
G134295 NA other downstream 1078089 9656357 ~ 9656727 (+)
G134338 NA other downstream 1274622 9852890 ~ 9867143 (+)
G134340 NA other downstream 1357658 9935926 ~ 9936411 (+)

Expression


Co-expression Network