G134305


Basic Information

Item Value
gene id G134305
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9676778 ~ 9679102 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU168553
TGTGAATCGTTTTTTTAGGAAGGTATGGTTAAGTGGAAACATGTACCGTTTCAGCCTCTTGTCGTatggcacagacacacacagacatagaaacagacagacacacagacggacaATCAATGAGATCCATTTAAAAGAAGGCAGTACTTTAAAAGTGGatgtttattgaaaataattattttaaaaaatatatcattaaaaagTTAGAGTGCCACATTTCCAGTTTCAAACTACAAACTTCTAAGTGCCCCCCCGCACCATCAAAAAAACATAACtcaatttattaaacaaaataagaatgTCTAGGCTATCAACAAATTCAAAGTGATACATTTGCACTGTACctgttaacattttgttttaatccagtcATGTATActatttatgtgtatgtatatacacacacacacacacacacacacacacatatttacaagtacacatacacatatgcatttaattagttAAACAAAAGTAACTTGTCAAATATGTCTCTGAATTTCAGATTTGaaatttatttcccccctcgTTGTTTTGTCAGCTGAGTCGTTCAGCTCCGCACATACCAAGCACTAGATACAGGAAGacaaaaaattgtatttggtcatgtttacatttttcatacagGAACACAAAACTCAGCCAGTTGCTCAGTGCATCGATGGACACTGCACCTTGGTATTATTTAACCAAAGATccagtataatttaaattatcacaaaatacaaatgccaAATGAGTTAAATAGTTGGTGTGTCTGTAGAAAGACTGTCCCCTGTATTATAATATTGGTAGTTTAGTTCTCTATTTACATAACTTCTCTACAGGAGGGTGAAACAAGGGAATTGACGGGATttgaaaaaacatgattatattGGTACAGTTCCCACCTTTGTTGAAATGTCCagtaaaatgatttatttgaattttgtgtttgaatCCTGTGTTTATATATCAGTCAACTGCAGTTATAGATACACATCCGACTGAAAGCACACAAGAGGATTCTGACTAATTTGCTAAAGGGAGACCCTGTTTAAGTTGAAGTaagatatttgaaaataatcatcattatgACATCAGGCGTGAGATTTTGGGAATAAGTacagcagcacagacagcaATGGAAGGACAGTAGAGTGTTTTGTTACCCTTTAAATAGTAGGCTCACCTCCATATGCACCtcatataaaaatgtaccaCGGTActgttcaaaaacaacaacaacaaacaaaagtcaGCTGATTGAACAAAAACAGGAGCACCACTTGATACTGCAGCAGCACTTTGGAACATATTTACCAGGTCTTGTGTGATGTTTATTGAAATGGGTGTAACTTTTGTGAATCCTTCATCCGGCCGTATGCAGAGGAATGACTATGGCAGTTGCCTTTTATAGACAACACACCGCGCCTTCCTGTGCGTTACACACATTCGCTGGGATAAAGCTGGCATTTATTTCTAATTCTGCTGACTGTTGGGGTGGCTGTctgctttttttctatttttgctgCAGTGCTGCATTGACTTTGCTTTCCTGCACAGTGAATGCAAGCTCGTACGGACTGCGACATACAATATATCCAGGCTTTTAACTCGCTATGCCTGGTTAAGAGGAAAATGAAACGAAACAGGGCTCAAATGAATGGAGTGTGGTAGACTCCATCTTTGCTCCACCACCAGTGCAAGGCCCAAAACAATGCCAACTTCAGAAGTCAAAGGAAAAGATGCCAAGGACTGATGTAGTGTGGGATTCAGGCCTACCCACCCACACTAATTTCCCAGGATGCATTTCAGGTGCActacaatataataatagtaatgtgtTAATTATAAAGCGCCTTGCATTGGAATCAAGGATCTCAAAGGCCAGAGGGAAAGGGAAGGAAAATGACTGTAACCCCAACTGTAGGAGTACAGGGGACTTAATGCAGGTGAGAATGTATGACCTCTTTTGGGCCCCtgctttggaaaaataaaagtgctaAAAGATCTTTAACGTCCACTCTATCGACAGGAGTTCAGTTTAACGTCTCATCCAAAAAGACGGCATCTCATACGTCCCCAGCTGCGCCCTGTCACTGTGCTTGGGCATCAAGTTGACGTGTCTGGTCCATAGGAAAGTCATTCAGCATGTACAGTGTTATCTAGGTTGTTCCACAATCACATtcacaaaaatgacaaatttaAGACAATTAGCAAAACAAAGTGACAATCAAAATACAACCAAATCCATCTGAAGCCAACAGTgtaaaagaacacaaacaaaaaacaacaaaaaagtcacATTTTGTTGCTAAAACGTAATGACATCTTAAATTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168553 True 2325 lncRNA 0.38 1 9676778 9679102

Neighbor

gene id symbol gene type direction distance location
AMCG00012057 LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327 coding upstream 3417 9659749 ~ 9673361 (+)
AMCG00012067 NA coding upstream 33447 9635496 ~ 9643331 (+)
AMCG00012056 NA coding upstream 131793 9542014 ~ 9544985 (+)
AMCG00012055 NA coding upstream 142537 9508741 ~ 9534241 (+)
AMCG00012052 NA coding upstream 236151 9438327 ~ 9440627 (+)
AMCG00012069 LOC106569594,LOC108427136 coding downstream 33120 9712222 ~ 9719197 (+)
AMCG00012075 NA coding downstream 300788 9979890 ~ 9999729 (+)
AMCG00012076 NA coding downstream 320636 9999738 ~ 10004091 (+)
AMCG00012074 NA coding downstream 335742 10014844 ~ 10016191 (+)
AMCG00012079 tmem55b,LOC106569577,LOC107576828,LOC107721780 coding downstream 388454 10067556 ~ 10074742 (+)
G134292 eif3f,LOC105905622 non-coding upstream 22178 9653852 ~ 9654600 (+)
G134284 NA non-coding upstream 30334 9646026 ~ 9646444 (+)
G134259 NA non-coding upstream 105060 9567280 ~ 9571718 (+)
G134236 NA non-coding upstream 137804 9534314 ~ 9538974 (+)
G134222 NA non-coding upstream 261861 9401454 ~ 9414917 (+)
G134326 NA non-coding downstream 90555 9769657 ~ 9770685 (+)
G134335 NA non-coding downstream 168420 9847522 ~ 9923017 (+)
G134346 NA non-coding downstream 207756 9886858 ~ 10428524 (+)
G134341 NA non-coding downstream 248810 9927912 ~ 9946489 (+)
G134350 LOC108239224 non-coding downstream 279249 9958351 ~ 10180707 (+)
G134295 NA other upstream 20051 9656357 ~ 9656727 (+)
G134291 NA other upstream 23544 9651349 ~ 9653234 (+)
AMCG00012043 NA other upstream 366847 9279988 ~ 9309931 (+)
G133974 NA other upstream 1113564 8561042 ~ 8563214 (+)
AMCG00012008 NA other upstream 1156130 8510011 ~ 8520648 (+)
G134338 NA other downstream 173788 9852890 ~ 9867143 (+)
G134340 NA other downstream 256824 9935926 ~ 9936411 (+)
G134357 NA other downstream 355084 10034186 ~ 10034693 (+)
G134365 NA other downstream 454925 10134027 ~ 10134592 (+)
G134366 NA other downstream 460852 10139954 ~ 10140457 (+)

Expression


Co-expression Network