G134350 (LOC108239224)


Basic Information

Item Value
gene id G134350
gene name LOC108239224
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9958351 ~ 10180707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU168619
tctctctggcacagtaatacacagcgctgtcttcagtcttcagtctgttcatttgtaaatacagtgtGCTTTTGGAGTTGTCTCTGGAGATGGTGAATCTGCCTTGAACTGACTGGGCATAATATTGGTTACTGCCATCAGTGTAAATGTAAGCCACCCATTCCAGCCCCTTCCCAGGAGCCTGTCTAACCCAGTACATTGCATAGCTGCTGAAAGTGAATCCTGAGGCTGTACAGGAAAATGTGTGGGATTCTCCAGGCTTCTTAACTGCTGCCTCAGACCCAGTCAGCACGATCTGGGACTGAA
>TU168621
tctctctggcacagtaatacacagcgctgtcttcagtcttcagtctgttcatttgtaaatacagtgtGCTTTTGGAGTTGTCTCTGGAGATGGTGAATCTGCCTTGAACTGACTGGGCATAATATATCTCTGCACTATCATACCTAATAATACCAACCCATTCCAGCCCCTTCCCAGGAGCCTGTCTAACCCAGTGCATCCAGTAGCTGCTGAATGTGAATCCTGAGGCTGTACAGGACAGTGTGTGGGATTCTCCGGGCTTTTTAACTGCTGCCTCAGACTCAGTCAGCACGATCTGGGACTGAACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108239224

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168619 False 306 lncRNA 0.48 2 9958351 10180707
TU168621 True 308 lncRNA 0.48 2 9958351 10177228

Neighbor

gene id symbol gene type direction distance location
AMCG00012069 LOC106569594,LOC108427136 coding upstream 239154 9712222 ~ 9719197 (+)
AMCG00012057 LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327 coding upstream 284990 9659749 ~ 9673361 (+)
AMCG00012067 NA coding upstream 315020 9635496 ~ 9643331 (+)
AMCG00012056 NA coding upstream 413366 9542014 ~ 9544985 (+)
AMCG00012055 NA coding upstream 424110 9508741 ~ 9534241 (+)
AMCG00012082 NA coding downstream 84393 10265100 ~ 10280532 (+)
AMCG00012083 NA coding downstream 158121 10338828 ~ 10353743 (+)
AMCG00012084 NA coding downstream 183249 10363956 ~ 10392598 (+)
AMCG00012087 LOC101065589 coding downstream 362706 10543413 ~ 10545945 (+)
AMCG00012086 LOC107749202,LOC104951120,LOC107733393 coding downstream 370963 10551670 ~ 10564853 (+)
G134341 NA non-coding upstream 11862 9927912 ~ 9946489 (+)
G134335 NA non-coding upstream 35334 9847522 ~ 9923017 (+)
G134326 NA non-coding upstream 187666 9769657 ~ 9770685 (+)
G134305 NA non-coding upstream 279249 9676778 ~ 9679102 (+)
G134292 eif3f,LOC105905622 non-coding upstream 303751 9653852 ~ 9654600 (+)
G134369 NA non-coding downstream 13687 10194394 ~ 10244729 (+)
G134339 NA non-coding downstream 18444 10199151 ~ 10200970 (+)
G134378 NA non-coding downstream 88973 10269680 ~ 10270054 (+)
G134495 NA non-coding downstream 414142 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 417832 10598539 ~ 10598841 (+)
G134340 NA other upstream 21940 9935926 ~ 9936411 (+)
G134338 NA other upstream 91208 9852890 ~ 9867143 (+)
G134295 NA other upstream 301624 9656357 ~ 9656727 (+)
G134291 NA other upstream 305117 9651349 ~ 9653234 (+)
AMCG00012043 NA other upstream 648420 9279988 ~ 9309931 (+)
G134337 NA other downstream 42297 10223004 ~ 10259224 (+)
G134373 NA other downstream 72103 10252810 ~ 10307839 (+)
G134343 NA other downstream 122566 10303273 ~ 10317818 (+)
AMCG00012088 NA other downstream 448977 10629684 ~ 10684097 (+)
G134613 NA other downstream 745899 10926606 ~ 10935107 (+)

Expression


Co-expression Network