G134877


Basic Information

Item Value
gene id G134877
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11916344 ~ 11918265 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169322
CCTCCTTCGCGCGCTCTTGCTCTTTCTCGCCAGCCCGCCCTCCAGGGAGCGAGCGAGAGGAAGAGTGAGAGGGTGAGATGGAAAGaaacatgtctgtgttttgaCAATGCACTGAATCGGACCGGACTGCGCTCTGGTATATCGTGGACGTGGACTGAGTTGCACTTGAGCTGAACAGACGGGACCCTACTGGACGGTTGTGATGGACTTTGCACTGGCGGACTGGACTGGGCGGAGCTGGACTGGACTTTATTGTACGGAGCTGTATTGTTACGGGCACAACTGGGTCTGGACCgtgttatgtatgtatgagcTGGCCTACTGTACCGTACCATAGTGTGCCGTACTGTGCTGCAGTGCATTGTATTGTAGActtggactggactggactgttaTGAAACACATCACTGACTCAACCACATGGGATGGATTTCCTGTATTGGACCCTCCAAattactggactggactgtaacCTGTCATgctatacagtactgtactgccCTCCCCCCACCTCGTTGACCAGACTGCACTGTATTGTCCCGACCAGTTTCAGGGGATGGCTGTGTCCTTGACTGGactgtattatactgtgctAGAGTACAATGGGCACTATTCTACAGTACGGTCCTCTGCTGGATCATATTGTACTGTAATGGACAGGATTGTACTTTAGTCCTGTGctttactgtactgcactgtataatTGACCAGTGCTTTCCTGTACTGGACCGGACCCTATTGGATGGTCCTGGGCTGTATGGTACTGCACTGGTCTTGCCTTAGCAGTTAGGGATTATTATATTGGATTGGTCTGGGCTGCATTGCCCTACACTGTATTGGATGAGGGGACTTGTGTCAACGGTTCTTTGCTTTAATTGCGGTTCTTGACGGTATTTCAACTTGACTGGACCGAACTATTCCTTCCCGGTTCCTAGACGACACTGTATTGCCCTTCACAAGAGCTGACTGTATTGTTCTTTAGTGTTCCAGACTGTACCAAACTGTTTTACTGTTATTGGCtatattgtgctgtactgtactgttctggACTGTATTGGACTGGACTTGACCTCTCAGCTTATCTTGCTCAGATCTTGCCAAAATTCCAGCATCCTTGTATCAGGGGCTTaatcaaattttttttttttctaaaaaaaaaacaacaaaaaaacaaaacaaaaaaaaaaaaggttctaTTTTCTTCCAGTTTTTTGTTGCCGTTTATTGAACGAGAGAAGacgaagaaaaacaaaaggagggagagaaagcgAGAACTCTGTGAAAAGACTCAAGGAATGAACAAATCCATatgagaaaaagaagaaaaacaatgttaatcaAGGCAGCTACTTAAAAGGTAactactgtaaaacaaacacaaaaa
>TU169323
CCCCCCCCTTCCTCCTTCGCGCGCTCTTGCTCTTTCTCGCCAGCCCGCCCTCCAGGGAGCGAGCGAGAGGAAGAGTGAGAGGGTGAGATGGAAAGaaacatgtctgtgttttgaCAATGCACTGAATCGGACCGGACTGCGCTCTGGTATATCGTGGACGTGGACTGAGTTGCACTTGAGCTGAACAGACGGGACCCTACTGGACGGTTGTGATGGACTTTGCACTGGCGGACTGGACTGGGCGGAGCTGGACTGGACTTTATTGTACGGAGCTGTATTGTTACGGGCACAACTGGGTCTGGACCgtgttatgtatgtatgagcTGGCCTACTGTACCGTACCATAGTGTGCCGTACTGTGCTGCAGTGCATTGTATTGTAGActtggactggactggactgttaTGAAACACATCACTGACTCAACCACATGGGATGGATTTCCTGTATTGGACCCTCCAAattactggactggactgtaacCTGTCATgctatacagtactgtactgccCTCCCCCCACCTCGTTGACCAGACTGCACTGTATTGTCCCGACCAGTTTCAGGGGATGGCTGTGTCCTTGACTGGactgtattatactgtgctAGAGTACAATGGGCACTATTCTACAGTACGGTCCTCTGCTGGATCATATTGTACTGTAATGGACAGGATTGTACTTTAGTCCTGTGctttactgtactgcactgtataatTGACCAGTGCTTTCCTGTACTGGACCGGACCCTATTGGATGGTCCTGGGCTGTATGGTACTGCACTGGTCTTGCCTTAGCAGTTAGGGATTATTATATTGGATTGGTCTGGGCTGCATTGCCCTACACTGTATTGGATGAGGGGACTTGTGTCAACGGTTCTTTGCTTTAATTGCGGTTCTTGACGGTATTTCAACTTGACTGGACCGAACTATTCCTTCCCGGTTCCTAGACGACACTGTATTGCCCTTCACAAGAGCTGACTGTATTGTTCTTTAGTGTTCCAGACTGTACCAAACTGTTTTACTGTTATTGGCtatattgtgctgtactgtactgttctggACTGTATTGGACTGGACTTGACCTCTCAGCTTATCTTGCTCAGATCTTGCCAAAATTCCAGCATCCTTGTATCAGGGGCTTaatcaaattttttttttttctaaaaaaaaaacaacaaaaaaacaaaacaaaaaaaaaaaaggttctaTTTTCTTCCAGTTTTTTGTTGCCGTTTATTGAACGAGAGAAGacgaagaaaaacaaaaggagggagagaaagcgAGAACTCTGTGAAAAGACTCAAGGAATGAACAAATCCATatgagaaaaagaagaaaaacaatgttaatcaAGGCAGCTACTTAAAAGGTAactactgtaaaacaaacacaaaaa
>TU169324
CCTCCTTCGCGCGCTCTTGCTCTTTCTCGCCAGCCCGCCCTCCAGGGAGCGAGCGAGAGGAAGAGTGAGAGGGTGAGATGGAAAGaaacatgtctgtgttttgaCAATGCACTGAATCGGACCGGACTGCGCTCTGGTATATCGTGGACGTGGACTGAGTTGCACTTGAGCTGAACAGACGGGACCCTACTGGACGGTTGTGATGGACTTTGCACTGGCGGACTGGACTGGGCGGAGCTGGACTGGACTTTATTGTACGGAGCTGTATTGTTACGGGCACAACTGGGTCTGGACCgtgttatgtatgtatgagcTGGCCTACTGTACCGTACCATAGTGTGCCGTACTGTGCTGCAGTGCATTGTATTGTAGActtggactggactggactgttaTGAAACACATCACTGACTCAACCACATGGGATGGATTTCCTGTATTGGACCCTCCAAattactggactggactgtaacCTGTCATgctatacagtactgtactgccCTCCCCCCACCTCGTTGACCAGACTGCACTGTATTGTCCCGACCAGTTTCAGGGGATGGCTGTGTCCTTGACTGGactgtattatactgtgctAGAGTACAATGGGCACTATTCTACAGTACGGTCCTCTGCTGGATCATATTGTACTGTAATGGACAGGATTGTACTTTAGTCCTGTGctttactgtactgcactgtataatTGACCAGTGCTTTCCTGTACTGGACCGGACCCTATTGGATGGTCCTGGGCTGTATGGTACTGCACTGGTCTTGCCTTAGCAGTTAGGGATTATTATATTGGATTGGTCTGGGCTGCATTGCCCTACACTGTATTGGATGAGGGGACTTGTGTCAACGGTTCTTTGCTTTAATTGCGGTTCTTGACGGTATTTCAACTTGACTGGACCGAACTATTCCTTCCCGGTTCCTAGACGACACTGTATTGCCCTTCACAAGAGCTGACTGTATTGTTCTTTAGTGTTCCAGACTGTACCAAACTGTTTTACTGTTATTGGCtatattgtgctgtactgtactgttctggACTGTATTGGACTGGACTTGACCTCTCAGCTTATCTTGCTCAGATCTTGCCAAAATTCCAGCATCCTTGTATCAGGGGCTTaatcaaattttttttttttctaaaaaaaaaacaacaaaaaaacaaaacaaaaaaaaaaaaggttctaTTTTCTTCCAGTTTTTTGTTGCCGTTTATTGAACGAGAGAAGacgaagaaaaacaaaaggagggagagaaagcgAGAACTCTGTGAAAAGACTCAAGGAATGAACAAATCCATatgagaaaaagaagaaaaacaatgttaatcaAGGCAGCTACTTAAAAGGTAactactgtaaaacaaacacaaaaaaggaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaatcaaaataaagaccATGAGCTTGTTTATAATTCTGGTGTGCGGCTGTTTCAGTGGTTCCTTTGGTTACTGTCCGGGTCTTTATCATACGGACGCTCCCTGTCGGGCCCGGGGAACTCGTCTGCGTCGGGGATGGGCAGTTCCGGTCCACAGGGGGTCGGACCACATCCTCTGGTCGTCTTGGCTCAGACCTTTTCTCAACAGATGGAAATGTGCAGACTTATGAAATGTGTTCTCATAGGGTGGGGTTTACCttttacaacaacaactacaacaacgcGGCACACTTCCTTTGGAGCTACAGTTCTGTCAAGTCTTGCAGGTCACAGACATCACCCACACCTTGCATGTATGGTCACTTATGGAGAACACAAACGCCAGGAGCCACGGCGGTACTTCAGGACTAGGGTTAAGACAGCCCTgctaaatgcaatacaattacCTGTAAGTCATGGCTATTGTGTTGTGCCAAAACGTGCGAGTCAGAAAAGG

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU169322 False 1384 lncRNA 0.45 1 11916354 11917737
TU169323 False 1394 lncRNA 0.45 1 11916344 11917737
TU169324 True 1912 lncRNA 0.46 1 11916354 11918265

Neighbor

gene id symbol gene type direction distance location
AMCG00012159 fbxl19,kdm2b,LOC107694447 coding upstream 2390 11901547 ~ 11913954 (+)
AMCG00012155 NA coding upstream 113219 11798577 ~ 11803125 (+)
AMCG00012151 NA coding upstream 165720 11738177 ~ 11750624 (+)
AMCG00012150 NA coding upstream 191238 11719340 ~ 11725106 (+)
AMCG00012153 NA coding upstream 215962 11690723 ~ 11700382 (+)
AMCG00012162 NA coding downstream 73250 11991515 ~ 12028909 (+)
AMCG00012161 NA coding downstream 115082 12033347 ~ 12036522 (+)
AMCG00012167 stx1b,LOC108228377,LOC107397241,LOC102220115,LOC107666328,LOC103393442 coding downstream 167093 12085358 ~ 12095939 (+)
AMCG00012168 NA coding downstream 213982 12132247 ~ 12141475 (+)
AMCG00012172 phkg2,LOC106907820,LOC103155081,LOC107089513,LOC101485765 coding downstream 299441 12217706 ~ 12223005 (+)
G134779 NA non-coding upstream 71512 11819257 ~ 11844832 (+)
G134766 NA non-coding upstream 149933 11711250 ~ 11766411 (+)
G134749 NA non-coding upstream 411696 11503960 ~ 11504648 (+)
G134698 NA non-coding upstream 614279 11300334 ~ 11302065 (+)
G134692 NA non-coding upstream 682461 11233681 ~ 11233883 (+)
G134879 NA non-coding downstream 6003 11924268 ~ 11926131 (+)
G134923 NA non-coding downstream 200966 12119231 ~ 12119660 (+)
G134942 NA non-coding downstream 229802 12148067 ~ 12158458 (+)
G134944 NA non-coding downstream 240953 12159218 ~ 12159429 (+)
G134945 NA non-coding downstream 242330 12160595 ~ 12161253 (+)
AMCG00012152 NA other upstream 45714 11619177 ~ 11870630 (+)
G134743 NA other upstream 470181 11436379 ~ 11446163 (+)
G134697 fus,LOC103040960,LOC107658502 other upstream 622445 11242229 ~ 11293899 (+)
AMCG00012112 NA other upstream 855314 11049065 ~ 11061030 (+)
G134613 NA other upstream 981237 10926606 ~ 10935107 (+)
G134898 NA other downstream 112632 12030897 ~ 12031490 (+)
G134955 NA other downstream 254273 12172538 ~ 12172802 (+)
G134958 NA other downstream 262796 12181061 ~ 12181320 (+)
G134968 NA other downstream 273290 12191555 ~ 12192408 (+)
G135026 NA other downstream 647947 12566212 ~ 12716115 (+)

Expression


Co-expression Network