G134946


Basic Information

Item Value
gene id G134946
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12161458 ~ 12162298 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169404
agagcgAGCCCCAACACTCACCACAGTCGTACTGGATGAGCCGCAGGTCGGGGAACTGCGTGCGCATGTTGCAGTGGATGCGATGCAGGCAGACGGTGCGGGGGGACAGCTCGGCACGCAGCCGCTCCCGGAACACCGCCTGGTCGTGTGCCAGCCAGGGGGGGGGGTGCGAGGTGTGCATCGTGATGGCAGGGGCCTCCACAGGGGGGATGACGAAAATGAACCTGccagagagagaaggaatggtaataaagaaataaaccgGTGCTGAAGTGTGGCGTCAGTCGGGGCGGGGGGAGAGCACCGCACAGCCGCAGTACCTGTCGATGATGGTGTTCAGCTGCTGGATGCGCTGCTCTGGCGTGTGGATGGCGCGCCGCAGGGCCTCGCTGCGCTCCCAGTACCGGTCGGGCGCATCCGACTGGGCCGCCAGGCAGTGGGCGTAGCCGGAGCTCTGCCACTGGCCGCAGGGGGCGGCGGGGCGGGGCGTGATGGTCAGGAACTGCAGGACCTCCTGGCCGTAGATGGGCCGGGCCGAGCAGTGCTGCTCGTTCACACGCAGGATGCGCGAGAGCCGGGCCTCGCGCTGGGCCTTCCTCCGGTCTGCCAGccaggactgagagagagagcaaccactataaatataaattcccACATAACACAAGATCCACTGACATTAACCTGATAAATGTACACTACACAACTGTGTCATGGATTCggtcattttagttttttttatctaaaCCAAATGCTTTTTGCCAACATGTCACCTCAGCAACCAGTGACTGCATCTACCAAATCCTGGCCTACTGCCCTGAGGCCAAGACCTGTTAAGATGCTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169404 True 841 lncRNA 0.60 1 12161458 12162298

Neighbor

gene id symbol gene type direction distance location
AMCG00012168 NA coding upstream 19983 12132247 ~ 12141475 (+)
AMCG00012167 stx1b,LOC108228377,LOC107397241,LOC102220115,LOC107666328,LOC103393442 coding upstream 65519 12085358 ~ 12095939 (+)
AMCG00012161 NA coding upstream 124936 12033347 ~ 12036522 (+)
AMCG00012162 NA coding upstream 132549 11991515 ~ 12028909 (+)
AMCG00012159 fbxl19,kdm2b,LOC107694447 coding upstream 247504 11901547 ~ 11913954 (+)
AMCG00012172 phkg2,LOC106907820,LOC103155081,LOC107089513,LOC101485765 coding downstream 55408 12217706 ~ 12223005 (+)
AMCG00012177 LOC107677883,LOC107563784,LOC107743762,LOC108273672 coding downstream 64016 12226314 ~ 12238811 (+)
AMCG00012178 NA coding downstream 83517 12245815 ~ 12247965 (+)
AMCG00012181 NA coding downstream 236306 12398604 ~ 12403204 (+)
AMCG00012182 NA coding downstream 287413 12449711 ~ 12453677 (+)
G134945 NA non-coding upstream 205 12160595 ~ 12161253 (+)
G134944 NA non-coding upstream 2029 12159218 ~ 12159429 (+)
G134942 NA non-coding upstream 3000 12148067 ~ 12158458 (+)
G134923 NA non-coding upstream 41798 12119231 ~ 12119660 (+)
G134879 NA non-coding upstream 235327 11924268 ~ 11926131 (+)
G134947 NA non-coding downstream 958 12163256 ~ 12163563 (+)
G134948 NA non-coding downstream 1357 12163655 ~ 12164196 (+)
G135005 LOC104962440 non-coding downstream 197699 12359997 ~ 12360317 (+)
G135007 NA non-coding downstream 200247 12362545 ~ 12362843 (+)
G135030 NA non-coding downstream 449867 12612165 ~ 12648613 (+)
G134898 NA other upstream 129968 12030897 ~ 12031490 (+)
AMCG00012152 NA other upstream 290828 11619177 ~ 11870630 (+)
G134743 NA other upstream 715295 11436379 ~ 11446163 (+)
G134697 fus,LOC103040960,LOC107658502 other upstream 867559 11242229 ~ 11293899 (+)
AMCG00012112 NA other upstream 1100428 11049065 ~ 11061030 (+)
G134955 NA other downstream 10240 12172538 ~ 12172802 (+)
G134958 NA other downstream 18763 12181061 ~ 12181320 (+)
G134968 NA other downstream 29257 12191555 ~ 12192408 (+)
G135026 NA other downstream 403914 12566212 ~ 12716115 (+)
G135025 NA other downstream 451675 12613973 ~ 12648812 (+)

Expression


Co-expression Network