G135005 (LOC104962440)


Basic Information

Item Value
gene id G135005
gene name LOC104962440
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12359997 ~ 12360317 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169468
atcgagggaaagatgaatgcagcaatgtacagagacatccttgatgaaaacctgctccagagtgctctggacctcagactggggtgaaggttaatcttccaacaggacaacgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagcccagacttgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccttccaacctgatggagcttgagaggtcctgcaaagaagaaatgggagaaactgcccaaaaatag

Function

NR:

description
PREDICTED: uncharacterized protein LOC104962440

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169468 True 321 lncRNA 0.50 1 12359997 12360317

Neighbor

gene id symbol gene type direction distance location
AMCG00012178 NA coding upstream 112032 12245815 ~ 12247965 (+)
AMCG00012177 LOC107677883,LOC107563784,LOC107743762,LOC108273672 coding upstream 121186 12226314 ~ 12238811 (+)
AMCG00012172 phkg2,LOC106907820,LOC103155081,LOC107089513,LOC101485765 coding upstream 136992 12217706 ~ 12223005 (+)
AMCG00012168 NA coding upstream 218522 12132247 ~ 12141475 (+)
AMCG00012167 stx1b,LOC108228377,LOC107397241,LOC102220115,LOC107666328,LOC103393442 coding upstream 264058 12085358 ~ 12095939 (+)
AMCG00012181 NA coding downstream 38287 12398604 ~ 12403204 (+)
AMCG00012182 NA coding downstream 89394 12449711 ~ 12453677 (+)
AMCG00012187 NA coding downstream 157051 12517368 ~ 12528915 (+)
AMCG00012189 NA coding downstream 181518 12541835 ~ 12548644 (+)
AMCG00012190 NA coding downstream 206324 12566641 ~ 12569000 (+)
G134948 NA non-coding upstream 195801 12163655 ~ 12164196 (+)
G134947 NA non-coding upstream 196434 12163256 ~ 12163563 (+)
G134946 NA non-coding upstream 197699 12161458 ~ 12162298 (+)
G134945 NA non-coding upstream 198744 12160595 ~ 12161253 (+)
G134944 NA non-coding upstream 200568 12159218 ~ 12159429 (+)
G135007 NA non-coding downstream 2228 12362545 ~ 12362843 (+)
G135030 NA non-coding downstream 251848 12612165 ~ 12648613 (+)
G135027 NA non-coding downstream 276382 12636699 ~ 12699876 (+)
G135028 NA non-coding downstream 332351 12692668 ~ 12693815 (+)
G135033 NA non-coding downstream 359545 12719862 ~ 12721164 (+)
G134968 NA other upstream 167589 12191555 ~ 12192408 (+)
G134958 NA other upstream 178677 12181061 ~ 12181320 (+)
G134955 NA other upstream 187195 12172538 ~ 12172802 (+)
G134898 NA other upstream 328507 12030897 ~ 12031490 (+)
AMCG00012152 NA other upstream 489367 11619177 ~ 11870630 (+)
G135026 NA other downstream 205895 12566212 ~ 12716115 (+)
G135025 NA other downstream 253656 12613973 ~ 12648812 (+)
AMCG00012191 NA other downstream 342006 12702323 ~ 12724194 (+)
G135037 NA other downstream 410466 12770783 ~ 12777157 (+)
G135038 NA other downstream 423771 12784088 ~ 12786060 (+)

Expression


Co-expression Network