Gene
RNA
| Item | Value |
|---|---|
| gene id | G135038 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030138.1 |
| NCBI id | CM030138.1 |
| chromosome length | 24262032 |
| location | 12784088 ~ 12786060 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007185 | transmembrane receptor protein tyrosine phosphatase signaling pathway | biological_process |
| id | description |
|---|---|
| ko00511 | Other glycan degradation |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU169528 | True | 414 | lncRNA | 0.56 | 2 | 12784088 | 12786060 |
| TU169530 | False | 302 | TUCP | 0.54 | 2 | 12785208 | 12786060 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012194 | NA | coding | upstream | 20412 | 12762624 ~ 12763676 (+) |
| AMCG00012193 | NA | coding | upstream | 25342 | 12758021 ~ 12758746 (+) |
| AMCG00012192 | NA | coding | upstream | 129772 | 12651153 ~ 12654316 (+) |
| AMCG00012198 | NA | coding | upstream | 161007 | 12621011 ~ 12623081 (+) |
| AMCG00012186 | NA | coding | upstream | 192716 | 12588930 ~ 12591372 (+) |
| AMCG00012199 | NA | coding | downstream | 1340 | 12787400 ~ 12788020 (+) |
| AMCG00012200 | NA | coding | downstream | 4467 | 12790527 ~ 12799451 (+) |
| AMCG00012206 | NA | coding | downstream | 247048 | 13033108 ~ 13065375 (+) |
| AMCG00012207 | NA | coding | downstream | 283144 | 13069204 ~ 13074014 (+) |
| AMCG00012209 | NA | coding | downstream | 294129 | 13080189 ~ 13080518 (+) |
| G135033 | NA | non-coding | upstream | 62924 | 12719862 ~ 12721164 (+) |
| G135027 | NA | non-coding | upstream | 84212 | 12636699 ~ 12699876 (+) |
| G135028 | NA | non-coding | upstream | 90273 | 12692668 ~ 12693815 (+) |
| G135030 | NA | non-coding | upstream | 135475 | 12612165 ~ 12648613 (+) |
| G135007 | NA | non-coding | upstream | 421245 | 12362545 ~ 12362843 (+) |
| G135045 | NA | non-coding | downstream | 50192 | 12836252 ~ 12840315 (+) |
| G135051 | NA | non-coding | downstream | 87158 | 12873218 ~ 12895581 (+) |
| G135053 | NA | non-coding | downstream | 103710 | 12889770 ~ 12901593 (+) |
| G135055 | NA | non-coding | downstream | 110970 | 12897030 ~ 12897756 (+) |
| G135067 | NA | non-coding | downstream | 173688 | 12959748 ~ 13247725 (+) |
| G135037 | NA | other | upstream | 6931 | 12770783 ~ 12777157 (+) |
| AMCG00012191 | NA | other | upstream | 59894 | 12702323 ~ 12724194 (+) |
| G135026 | NA | other | upstream | 67973 | 12566212 ~ 12716115 (+) |
| G135025 | NA | other | upstream | 135276 | 12613973 ~ 12648812 (+) |
| G134968 | NA | other | upstream | 591680 | 12191555 ~ 12192408 (+) |
| G135070 | NA | other | downstream | 182317 | 12968377 ~ 12974053 (+) |
| AMCG00012217 | NA | other | downstream | 483136 | 13269196 ~ 13276971 (+) |
| G135058 | NA | other | downstream | 636375 | 13422435 ~ 13425359 (+) |
| AMCG00012228 | NA | other | downstream | 685041 | 13471101 ~ 13508799 (+) |
| G135240 | NA | other | downstream | 733361 | 13519421 ~ 13520494 (+) |
