G135117


Basic Information

Item Value
gene id G135117
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13287666 ~ 13298200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169639
ATCCAGCGTCTctagtttattaaaaataggAGGATTCATTAAAACGCAAGAACATAAGAGCAATTGGGAACATTTACAACAGGACCACTTTACAGAGCATCGTAtgcaagtctgtgtgtgtttgtctgtctgtctgtgtttggcTCCTATTGGAATCCACCCCCATCCCCAAACTAaactccaaaaataaaaaaagtcactACAATCTGAAGAACAAACGCAGATTGAGAATTCAGAAGGGAGATTCCTGAAGACTGAAGAGCAAATAGACCAGTGCTGCCCAATCCAGGACCTGGGGGCCACAGTGTCCACGGCAGAGGTGTCAGTCAGGCTCCAGCTCGGGGGGTAAGGGATGGGGCACAGGATCTCCTGGTtgttgttccagcccagctctcctTAACCGCTCTAATTGAAGGATGCACTgagtactctctctctccagactccCAATCTAAAgtaatccaattatttaatcAGCTACAATTGTCAGCCCTATTAGGCCAGCCACAGAATTGATTCTCTCAGATGGCCATCTGCTAATTCCACCCACTTTATTTGGAAACTAAAACACACCAACAGCTAAAGAAACCAAGCCCCTATGACATCAGAGAAGATGCTTGTTGATTggttactgtatttttacttaTTAAAGCCAAGAATTGGCTCGagtttgcttctcattgatatTTATTTGGTTCTCACTTAGCCGagacttaaagaaaaaaaaacaaaaaaacaaccacaaacaaGACCTGGAATAAAAGCTGTAGGTGGAATTCCAATAGAAATAGAGTGATATTGTGTGTCCGTCAGTCTCTGTACAACTCTGTGTGTGATCCTGAGTCTGTCTGTCGGTGAGTAGATCTCTGTACATTCCTGTATGTCTGTCTCTTaatgtccgtctgtgtgtgtgtgtgtgtgctactgCACGTCAGGTATAGAGCTCAAAGTCCAGTCTCTTGGAGTTGTAGAACTGTCCGTTGGTCTGTCCAATCCGGCGACAATAGACCCCATCCTTAAAATAGCCCTGATCAACCCATTCCTGCATCTGTTGACTGGTGAAGGGCCCATACAGCTCTGACTGCTCTCCACTCTCCCACTTATACTCCCACATGACCTCCTCACTCGCTATGCCACTGTCTTCTGCCTCCTCgtcctctccctcactctcctccTGTCTTTTCCTCGCAAGCTCCTTCCCGTCGATCTCCTCAGCGAACATATCCagttcatcctcctcctcctcttcctccccctctcctcccatCTTCTTTTTCTTGGGGACCTTGGAGGCTTTGGCCTTTAACCTGTAGGCCAGGGTTTCATAGGTCTTCTGGTAGATCTCAAACTCCCCAGACGCCACCAGTCGGTCAGCCAGGGCGGTCAGTCTGTCCAGTTTCTCCGTGTCCCTGTCC
>TU169641
CTGGACTAAGATCTGATTGGCCCTCAGGTTGCCGCTCCGGTTTAATTTCTGATTGGTCACTCCCCAGGTCAGAATGCTCAAGCCCCACCCCCAGTCTCTGACTCTCCTCTGATTGGTGCGTGACGGCTGCTGGTTTGTGTCTGGAACCCTTAAGCCCTTTGTTTCTGTGAAGACAAAACGTACAGGGATTAAAACGTACACGCATACTAACCAGGGTTTCCCCCAAAAATGTGAATAGGCACGGCAGTCTGTCATTCTGTGTCCATCTGTGTGTctagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctactgCACGTCAGGTATAGAGCTCAAAGTCCAGTCTCTTGGAGTTGTAGAACTGTCCGTTGGTCTGTCCAATCCGGCGACAATAGACCCCATCCTTAAAATAGCCCTGATCAACCCATTCCTGAGAAAGGGGTAGGGAGAGAGAATAGGAGAGGAATGTTAATACAAACATACTGACTGGACATcaacagtacattaacactgaagCTCAGAGAAAAGTTAAATTTGACTGATttgacactacagtacaatactatacatcaataacacagtagtgagagagacacacagagaactGAGTGACTGGACAATCTAGTACAATACTATACatcaatgagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169639 True 1415 lncRNA 0.47 3 13293619 13298200
TU169641 False 672 lncRNA 0.46 2 13287666 13294886

Neighbor

gene id symbol gene type direction distance location
AMCG00012218 NA coding upstream 85274 13187382 ~ 13202392 (+)
AMCG00012212 NA coding upstream 104836 13166600 ~ 13182830 (+)
AMCG00012213 NA coding upstream 139092 13144427 ~ 13148574 (+)
AMCG00012211 NA coding upstream 155704 13127168 ~ 13131962 (+)
AMCG00012210 NA coding upstream 165660 13120013 ~ 13122006 (+)
AMCG00012223 NA coding downstream 4856 13303056 ~ 13307523 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding downstream 19715 13317915 ~ 13323389 (+)
AMCG00012227 NA coding downstream 227484 13525684 ~ 13527970 (+)
AMCG00012236 NA coding downstream 242953 13541153 ~ 13543947 (+)
AMCG00012229 pelo,LOC107674509 coding downstream 251854 13550054 ~ 13556902 (+)
G135110 NA non-coding upstream 25612 13261759 ~ 13262054 (+)
G135067 NA non-coding upstream 39941 12959748 ~ 13247725 (+)
G135097 NA non-coding upstream 71306 13212674 ~ 13216360 (+)
G135073 NA non-coding upstream 301524 12985507 ~ 12986142 (+)
G135072 NA non-coding upstream 302572 12984445 ~ 12985094 (+)
G135131 NA non-coding downstream 74403 13372603 ~ 13397636 (+)
G135137 NA non-coding downstream 119205 13417405 ~ 13421051 (+)
G135138 NA non-coding downstream 129151 13427351 ~ 13427999 (+)
G135226 NA non-coding downstream 179362 13477562 ~ 13484478 (+)
G135250 NA non-coding downstream 232572 13530772 ~ 13531293 (+)
AMCG00012217 NA other upstream 10695 13269196 ~ 13276971 (+)
G135070 NA other upstream 313613 12968377 ~ 12974053 (+)
G135038 NA other upstream 501606 12784088 ~ 12786060 (+)
G135037 NA other upstream 510509 12770783 ~ 12777157 (+)
AMCG00012191 NA other upstream 563472 12702323 ~ 12724194 (+)
G135058 NA other downstream 124235 13422435 ~ 13425359 (+)
AMCG00012228 NA other downstream 172901 13471101 ~ 13508799 (+)
G135240 NA other downstream 221221 13519421 ~ 13520494 (+)
G135264 NA other downstream 286070 13584270 ~ 13585916 (+)
AMCG00012245 NA other downstream 509013 13807213 ~ 13817545 (+)

Expression


Co-expression Network