G135151


Basic Information

Item Value
gene id G135151
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12578865 ~ 12632059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169720
CAAGGCATGATGGATCcatgttttcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCGACAGAAaattcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatttacaataagaTCTGCATCAGTAATGTTTACATACACAGAGGAAACGGCATTAACTTAGTTAATAACATTAACTGCAGAGAGGAGGTTTGTTGTTTACAGGTTTGCAGGAGATAATGGCTGCCTAAGGAAATTTCCAGAAAATGACATGAACTAAATGTTATAACACTTGAACACTAGAGGCGACACGTCACAAGCTAAAGGTCTTTCTGATCCCagtgttttctattgttttccCACAGCTGATGTGACTCTGGACCCTGAGACAGCAAACTGTGAACTCACCCTGTCTGAGGATGGGAAGAGAGTGAGATATGCAGAGAGGCAGGATCTCCCTGACAATCAGCACAGATTTGATTCCTGGGAGTGTGTCGTGAGCAGAGAGAGCTTCACCTCAGGGAGACACTACTGGGTGGTGGAGGTGAATGGAGGGTGGAGAATAGGAGTCACCAGAGAGTCTGCAAACAGGAGAGGAGTGTTCAGCTTCACTCCCCAGCAGGGATACTGGTGTCTGCAATGTTTGTCTTCTTATCTCTCTGCTCTCACTGACCCTGGGACCCGCCTCCCTCAGACTCTGCGTCCCAGGAtgctgggggtgtgtgtggaTATTGAGGAGAGACGGGTCTCCTTTTACACAGTGGAGTCCAGGGCTCATATCTACACCTTCACTGACATGCACTTCACTGAGGGAGAGAAGATCTATCCAGTCTTTTGGAACTGGGATAGAAACAGAGACCTTGTGATTCTGCCTCCTGTTGAGACTGAAACGGGACATTCATGAGAAAAtcgttattattatgatgatgtcgctctgtggctcctgtgcttctatatatatgttgtaaaaTAAGTGTCTCTAttaattcagttatta
>TU169722
catgttttcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCGACAGAAaattcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttagCTGATGTGACTCTGGACCCTGAGACAGCAAACTGTGAACTCACCCTGTCTGAGGATGGGAAGAGAGTGAGATATGCAGAGAGGCAGGATCTCCCTGACAATCAGCACAGATTTGATTCCTGGGAGTGTGTCGTGAGCAGAGAGAGCTTCACCTCAGGGAGACACTACTGGGTGGTGGAGGTGAATGGAGGGTGGAGAATAGGAGTCACCAGAGAGTCTGCAAACAGGAGAGGAGTGTTCAGCTTCACTCCCCAGCAGGGATACTGGTGTCTGCAATGTTTGTCTTCTTATCTCTCTGCTCTCACTGACCCTGGGACCCGCCTCCCTCAGACTCTGCGTCCCAGGAtgctgggggtgtgtgtggaTATTGAGGAGAGACGGGTCTCCTTTTACACAGTGGAGTCCAGGGCTCATATCTACACCTTCACTGACATGCACTTCACTGAGGGAGAGAAGATCTATCCAGTCTTTTGGAACTGGGATAGAAACAGAGACCTTGTGATTCTGCCTCCTGTTGAGACTGAAACGGGACATTCATGAGAAAAtcgttattattatgatgatgtcgctctgtggctcctgtgcttctatatatatgttgtaaaaTAAGTGTCTCTAttaattcagttatta
>TU169725
CAAGGCATGATGGATCcatgttttcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCGACAGAAaattcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtacatgccATGATATAATTAGTGAAACATTAAACACGTTTAAGTACTTGATATATT
>TU169728
TGGACAGTGATCTGATGTGACTCTGGACCCTGAGACAGCAAACTGTGAACTCACCCTGTCTGAGGATGGGAAGAGAGTGAGATATGCAGAGAGGCAGGATCTCCCTGACAATCAGCACAGATTTGATTCCTGGGAGTGTGTCGTGAGCAGAGAGAGCTTCACCTCAGGGAGACACTACTGGGTGGTGGAGGTGAATGGAGGGTGGAGAATAGGAGTCACCAGAGAGTCTGCAAACAGGAGAGGAGTGTTCAGCTTCACTCCCCAGCAGGGATACTGGTGTCTGCAATGTTTGTCTTCTTATCTCTCTGCTCTCACTGACCCTGGGACCCGCCTCCCTCAGACTCTGCGTCCCAGGAtgctgggggtgtGTGTAGATAAGAGCCCTGGACTCCACTTTAAAGAAGAAGACCTGCCTCTCCTCAATATCCACACACACCCCCAGTATCTTGGGCAGCAGACTCTGAGGGAGGGTTTTCATTGGAGTAGTGAGAGCAGAGAGACGGGATGAGTAACAATTCAGACCCCAGTATCCCTGCTGGGGAGTGAAGCTGAAACCTCCTTTCCTCTGGGCAGACTCTTTGGTCACTCCTATTGAGCACTCTCCATTCACCTCCACCACCCAGTAGTGTCTCCCTGAGGTGAAGCTCTCTCTGCTCACGACACAGGACCAGAAATCAAATCTCTGTGGATTGTCAGGGAGATCCtgcctctctccttctctcactctcttcccATCCTCAGACAG

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169720 True 1089 lncRNA 0.44 2 12614254 12629803
TU169722 False 815 lncRNA 0.47 2 12614254 12615326
TU169725 False 262 lncRNA 0.37 3 12581755 12629803
TU169728 False 745 lncRNA 0.53 3 12578865 12632059

Neighbor

gene id symbol gene type direction distance location
AMCG00012185 NA coding downstream 74360 12483528 ~ 12504505 (-)
AMCG00012184 NA coding downstream 138393 12434496 ~ 12440472 (-)
AMCG00012183 NA coding downstream 155522 12403992 ~ 12423343 (-)
AMCG00012179 NA coding downstream 238447 12318901 ~ 12340418 (-)
AMCG00012180 NA coding downstream 299623 12268225 ~ 12279242 (-)
AMCG00012188 NA coding upstream 1678 12633737 ~ 12641612 (-)
AMCG00012195 NA coding upstream 89178 12721237 ~ 12756347 (-)
AMCG00012201 NA coding upstream 174903 12806962 ~ 12825753 (-)
AMCG00012202 NA coding upstream 227702 12859761 ~ 12886799 (-)
AMCG00012205 NA coding upstream 271198 12903257 ~ 12923677 (-)
G135008 NA non-coding downstream 216025 12362535 ~ 12362840 (-)
G135002 NA non-coding downstream 312039 12266603 ~ 12266826 (-)
G134936 NA non-coding downstream 460273 12118340 ~ 12118592 (-)
G134899 NA non-coding downstream 561307 12014352 ~ 12017558 (-)
G134853 NA non-coding downstream 812449 11766072 ~ 11766416 (-)
G135160 NA non-coding upstream 160889 12792948 ~ 12840313 (-)
G135161 NA non-coding upstream 231801 12863860 ~ 12952125 (-)
G135184 NA non-coding upstream 518456 13150515 ~ 13214542 (-)
G135193 NA non-coding upstream 638753 13270812 ~ 13279294 (-)
G135202 NA non-coding upstream 689672 13321731 ~ 13329044 (-)
G134981 NA other downstream 355680 12221205 ~ 12223185 (-)
AMCG00012174 NA other downstream 365066 12190015 ~ 12213799 (-)
AMCG00012170 NA other downstream 456140 12109540 ~ 12122725 (-)
AMCG00012171 NA other downstream 471451 12074004 ~ 12107414 (-)
G134803 NA other downstream 1191886 11330466 ~ 11386979 (-)
AMCG00012196 NA other upstream 5034 12637093 ~ 12700730 (-)
G135152 NA other upstream 70391 12702450 ~ 12703485 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other upstream 132513 12764572 ~ 12802068 (-)
G135164 NA other upstream 263109 12895168 ~ 12911887 (-)
G135172 NA other upstream 450162 13082221 ~ 13101480 (-)

Expression


Co-expression Network