G135160


Basic Information

Item Value
gene id G135160
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12792948 ~ 12840313 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169743
TGTCCGCTATCAATCGCTAGTTAGCAGCACTAAGCTAGGTGTCTTAACGTAAGCAGGTCTTCTAGAATACCCTGGAGCTGTGGGAAATCTGAAATAATACGCCCATTGGCTACAAATCCAAATATGATTGGTTGATCAAGTTGTCAATCCAAACATGCCCTCTCATTCAGTTTAATGGGCCGGGCATTCTattgaggaaataaaatacCCTGGATGAACGATATTCTCCCCAGAGAGTCCGTAGAAAAATATCtgatttgttgtattttttcccaacaaaaaaacattcaaatgcacAGTGCatggacagaaaacaagaaacaagtttgcggaattttattttattttatttatagaattcattacggtttttttttttttttcatttttgtatttttttttatttaatgaaaaaacaaaatgtacaccCTCAGCATTTTTCAGAATACCCTAACAGCAATCTTACAGCATAATGTagggaaaaagaagaaaaaacaatcattatttACAATGTGATTGTTTGTGAGAGAAAAGTATCTGTGTTCTCCAATAAGTGAGTTTTGACACTTATCTGCAAATGCTCtgaaaaagtattattaaattacaagcAGATTGTGTGTtactttgtaattaaatattttttatatatagaattCGATTGACATATTccagattttaatattttaacatttaagcCCCTGCTTAAAGTAATACATGCAATTTTTGCTTATAAATCTTATATTTCAGAGGTAGTCCCCTGGCAAAGAGCCGAATAACAGTTGGTTTTGCGGGGGACAAAATGTGATACTTATCACATTGCCTTTGAGGAGAACTGAAGTGAAAGAGCATGTCATAATCTACATTAACTACATACTTGCATGGGTATGAAGGGGTCTAGTGGGAAGTGGTGAGCGACAGTGCTGTCTACCTCGaccaacacacaaaacacaaagtcaAAAATGTCTCATGGTTTGGTTGAGAGGAGCTTGAGGGGtatgacatttttaatatgtaatctTATGACTTTTCCTATACAGGTGTTCACTGTACTTTTCTGATACAGTATTGCAGGTGGAATGTAGAAATGATCAGCCTCCAAATTGAtctaattttgtttctttaaagccGCAGAATCCCAGAAGAATATAAGACCAAGACAAGGATTTGACACCTacaccttttttttattgcatcacTGCATCATAACTGGCAGACGACATGTAAACACAGTCTATCTGATCTTCCATGGAAGCCCAATTTCTACCACAGCTTGTTTTAAAGCTTCAGGTTTGGGCAGGTTTTCAGGTTTTCCATGtgctacattttcattttcatttgacaGCCCAAACTCACGCCAGACTCCTAACCCACCTGAATGGAAATGTGTGAACACCGATCAGGTATCAAGATGGTAGATAGAGTTAGAAGACCAAAGCGAAGAGTGGCAAAGAGGTAAGAAAAGCCCTGTAAGAAAAGTGTGTTTCAAAATCTGTCTGGTCTTAAAATCTCCTAAGATTGTAGGCCCTAGTTCGTTATGGCTTGCATTCGGTAATATGCACactgtacaaaatcaacagatAATCCcgtcacacacaaatatttctaataataaaaaggtgCACTATCCCTCTCCCCTACCATCCACATTTACAGAgcctccccccacccctacAATCCCATCCCAGAGTCTAAGGTCAGGAAGATCACATTGGAAACTGAATTAGTTTTATAGAAGAGTCACAATGAATTTATGATGTGTTATTGGTAAAGACAGTTGTCCATACAGattggagagaaacaaaatgagcTACAGCCAGTTGGTTTTGGTGTGATCTCAACCTAGATTGAATGGTGATTCTCTGATGGACTCTACATGTCGGGCTCTGAAATACAAAGAGATCGCaacattaaataactatatatttttcttaaaccaGGGAGCAATACAATAATATCAGGGTCTATCAGTTACCTCTATGAACATTAAAAGTACACCTAAAAATGCCCTGACACAAATATGGTTGTTGATTTTGAGTCAGGCTTTAATACTCCAATTTAAACCTACTTTTCACTGCTGCagacagttttcttttaaataattatttcaaaatgactgACACATTTTACTGAAGAGCAGAtgtcagacagagacagagtaTTCTGATCTTTCACTCAGTTACTTCCTTATTTATGTGGCTTATGCGAGATTATCAGATCTTATTTGTACAGgtaatcatttaaaacatggtGATTTCAGACAAAACATTGCAGAGTCTGGCGAGGATTGAGGTAGAAAATGcagcactgcaacaccaactaGAAGCCACTACAGCTCTCTGAGACTGGACACTGTAACCCTGGTTTCAAAGCACAGCATCTGGCACGACTGACGCTCCTGAATGCTGCCAATGCACTGAAGTCCTGAATTGGGGTCAGCCAACCCTTGACTGGGAGAGCCACACTGCTTTCTGGGTCTTTTGCTGCTTAATAGAGCTAGTTTATGGGCTTTGTTGGTCAAAGTTTCCACATGTTCAAGGTGTCCAGCGAGGGTTAACTGAGAGTGGGAAAACTGCAGGACAGTGGCTGTCACCCCCCCCGGCCAGTTCTGGATCCACTGAAAGAGGGAGTATAGAACAGGCAGAAGTGTCTCACCCCAATTGTAGGTCTTGCCCTCGGGGATGGTGCTGTGTGTCACTCTGCAGGAGTACTCATCACCCTTCTTGGGAGTGAAGGGCGCAGTCTTGGTCAGGTGGAAGCGCCAGCCCTGCTCGAATGCCAGGTCGGACTGCTTGAAGTCAGTGATGGGGTGTCCATCCTTCAGCAGGTCGATCTTGATGTCAGGGGGGTGGAAGCCGCTGACGTGGCAGATCAGGGTGTTATCCTTGTCGAACTCGCCTGGGTTGCGGCTGTACACCTGCACCTTGGGCATTGCTGTGAATGTACAGAAGAGGCACAGAGAGCTGGGGTCAATTATAGTTGCAA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU169743 True 2982 lncRNA 0.40 3 12792948 12840313

Neighbor

gene id symbol gene type direction distance location
AMCG00012195 NA coding downstream 36601 12721237 ~ 12756347 (-)
AMCG00012188 NA coding downstream 151336 12633737 ~ 12641612 (-)
AMCG00012185 NA coding downstream 288443 12483528 ~ 12504505 (-)
AMCG00012184 NA coding downstream 352476 12434496 ~ 12440472 (-)
AMCG00012183 NA coding downstream 369605 12403992 ~ 12423343 (-)
AMCG00012202 NA coding upstream 19448 12859761 ~ 12886799 (-)
AMCG00012205 NA coding upstream 62944 12903257 ~ 12923677 (-)
AMCG00012204 NA coding upstream 89474 12929787 ~ 12938820 (-)
AMCG00012203 NA coding upstream 114692 12955005 ~ 12960892 (-)
AMCG00012208 NA coding upstream 142016 12982329 ~ 12992699 (-)
G135151 NA non-coding downstream 160889 12578865 ~ 12632059 (-)
G135148 NA non-coding downstream 203141 12566673 ~ 12589807 (-)
G135008 NA non-coding downstream 430108 12362535 ~ 12362840 (-)
G135002 NA non-coding downstream 526122 12266603 ~ 12266826 (-)
G134936 NA non-coding downstream 674356 12118340 ~ 12118592 (-)
G135161 NA non-coding upstream 23547 12863860 ~ 12952125 (-)
G135184 NA non-coding upstream 310202 13150515 ~ 13214542 (-)
G135193 NA non-coding upstream 430499 13270812 ~ 13279294 (-)
G135202 NA non-coding upstream 481418 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 577092 13417405 ~ 13418804 (-)
G135152 NA other downstream 89463 12702450 ~ 12703485 (-)
AMCG00012196 NA other downstream 92218 12637093 ~ 12700730 (-)
G134981 NA other downstream 569763 12221205 ~ 12223185 (-)
AMCG00012174 NA other downstream 579149 12190015 ~ 12213799 (-)
AMCG00012170 NA other downstream 670223 12109540 ~ 12122725 (-)
G135164 NA other upstream 54855 12895168 ~ 12911887 (-)
G135172 NA other upstream 241908 13082221 ~ 13101480 (-)
AMCG00012222 NA other upstream 391309 13231622 ~ 13232389 (-)
AMCG00012226 cd2bp2 other upstream 456106 13296419 ~ 13300421 (-)
AMCG00012233 NA other upstream 679353 13519666 ~ 13524815 (-)

Expression


Co-expression Network