G135172


Basic Information

Item Value
gene id G135172
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13082221 ~ 13101480 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169761
CTTTTAAATGACAgtatgttcttttgtttgtcagtttaactataaaaataaataatttccttgttttgcaTGACACAGAGCGAGTCTGGGTATAAAGGGAAGATGTCTGTGCTAGTCGCCTCAAAAAACTGATGCCGCTCATCGTTGGAGTAAGAAACAAGGCCAGTGTTGCTGAGACTGCAGAGAGATGAAGAGTTCACTGATTgtggctgctgtgctgctgctggcGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGGGGGAGCGGCCAGAGATGCACTCGCACCGTGGAGGAGAGAGGAAGGCCAGAGTATTCATTCGCCAGTGTTGCTGAGACTACAGAGAGATGAAGAGTTCACTGATTGTGGCTACTGTGCTGCTGCTGGCGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGAGGGAGAGGCCAGAGATGCACTCGCACCGTGGAGACGTGTTACAGCTCTAATGATGTCTGCATCAGCGCCTACTTCCTCCCACCCGCCTCTGGTTTCTTCCAGAGATGTGGCAAGTCGTCTGAGTGTGCCATATACAGCACCAATCAAATAATCCAAGCCCACTGCTGCTACAGCGACCTCTGTAACTGAGTGACAAGGGTgggatggggatgggggtgggggttgtaaAGGTCCATTATCAGTCAAGCTTGGGAACCTCTCTTGAGCCTGATTCTGTGACATTGTTGAAATAAACTGCACTGAAACAGAGTACACATTGTCTCACTTGTGCCTTTCTCCTTTCTTGTGTCAATCATGCATTTTCATAGATAGATGCATGCATAGTATACATAGATCAAcagatatac
>TU169763
CTTTTAAATGACAgtatgttcttttgtttgtcagtttaactataaaaataaataatttccttgttttgcaTGACACAGAGCGAGTCTGGGTATAAAGGGAAGATGTCTGTGCTAGTCGCCTCAAAAAACTGATGCCGCTCATCGTTGGAGTAAGAAACAAGGCCAGTGTTGCTGAGACTGCAGAGAGATGAAGAGTTCACTGATTgtggctgctgtgctgctgctggcGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGGGGGAGCGGCCAGAGATGCACTCGCACCGTGGAGACGTGTCTGGGCTCCAATGATGCCTGCGTCAGCGCCATCTTCCTCCCACCCACCTCTGGTTTCTTCCAGAGATGTGGCAAATCATCTGAGTGTGCCTTATACAGCACCACTAATTTAATCCAAGCCCGATGCTGCAACAGGGACCTCTGTAACTGAGTGACCAAGCTAAAATCCGATACAAATTTCTAAGAAACAGTGGAATTGACAGTAAATATCTTAACAAGCAAATataaagggtgtgtgtgtgtggtatgtggttgtggtggtggtggtggtgggaggGGGGTTAGAAAGTTGTGCCAGAGGGGAACTCTATGGCTGGGGTTGggggagtggagagagaggcgGGGGTGTAAAGGTGTTCTGTTTGTATGTCTGTAACTCTCAATCTATTATCAGGGAAAGCTTGTAATCCTCTCTTCAGCCTGATTCTGTCATGTTGGTGAAATAAACTGCAGTTCAATGTAAACCACATTGCCTAGCTTATGATGTACACTGTTCGGACTGCTGTGGAATAATGTAATCAAAGCTTTGTTTGagtatttcatttgaattagcATTATCTTTAAACACAAGTTTAGTTAATCTCTATCCCTATTTTGTTGAACTGTAAATTTGCTTCACTGGATAACTTGCTTTTTGCAAAAAATCTTTTTGTTTCTAATTCTGTGATTTTGTTGAGGTTAGTGTGACACCGCAGAGCTGACAGTTCTCCTCATTGAGACATTTGAAATTGAGTCCAAAAAGTACATTCCCTGGATAAAGGTTTAAATACACACTACATATCAACAAGGGCCATATAAGAGACATTTTCTCAATGCTGGAGATgctgtggaagaacaatcagGTTAGAGcattagttgcaatgcctttaatacacgcagcgtggagaggaacagtgaatcaagaagatcccaaagtcgctctgccttcatttaaaagtcagaggcttttatacacaaaaaacaaagatctggttacaatcacaaaagtcattactatattatcttagagagttagctaagcagaatatatatcattataagacagagttcataggtcaacacatggattagggagcaggcacttcaatcatactgtttgacattgtctccaagattctcattgtaaataacaaacagaaatcaagcttccttctggcctgtccttctggcttgaccttatctttcttaagtatacaagtgagtaaaacaggtatgagagagaatttctaactttccttccacaatGCTCAACCCTGGACTTTCAACGCCTGAGACTTTGACCTGTCAAGTACATAATTCATGATGGCATTCATATCTTCACATTAAATTAtcacattaaacacattaaatcaaattatcaCAGTATCACATTAAATTCTGTAAATTCCAGGAGCAGTTTTGTAATTGATTCACTGTCCAGCTTACAAAGTGTGCTATGACAATTATTACTGACTGCAATACAGTAATCCGAGACTCCTGTATCATAGCAACATTTCTCCTATGCAGCGAATTGTTGGGTTACTATatttatctgagaaagagaatacTATCTAAAGGGGGGTGGGATATCACTCGTTACCATGGGAACTCATTCATGCATTGTCTAACAATGAGTGCACAGGCCTATAGGGTGCTGTGTGTTGTCACTCAGGCAGACCCCTCCTCTGTCTGCTTCAACTAGTACAGAGCACAGCCTCTTTTAACCAAAGCCAAGGCTCACACGTGACCTCCCAGGCTTTCAGTAGTATGCTCTCTGTCAGAAAACTGGgtttgcattcacaacctatcattccCTTTTGTATTCCCGAGAAAACTACCGAAAGGGGGATGGGGTACAGTATATCCAAGCCGTTATGAGGGAGGCCAGTGTTGCACAGcctgtaatgtattaaaataaaaccaaaaacgaCAGGCAGTGCGAGCTTCAATGCAATGTGTTTATTCCTTGATTTCCATCATCGAAAACTGCTCACGTCTGCCACAGAATGGTTCTTTTAGGTACTGCGCTAGTGCCGCCAATATTCGAttagcaaaaaaagaaaatgcatttaaaaaaaaaaaatagtgccCCCCTCTGTCTTGTTGTTCAGTTGTACATTTGCCCCACACCAGCAGCAACAGTTAAGGGAGCCAGCCCAGAGGCCACACCCTGCTAGGGTATGAGGCATCAGCTTAAGAACAATAGGAAAGGTGACAGGGAATAAATAGAAACCAGCACACCAATAATCAATGGACCAATAGCAGGGGCCACAG
>TU169764
GTTTTTGGATGTGCACCTGGGGTGCCGATATGTATCTCCCGGTACAGATTGCTACTATGTCCGCATTCCGCTTTTTGTTCTCATAAgatgtaaatacaattttcagcTCGGACCAGATAGCTGATAAAACAAGCCCGTCTAATGCAACATAttcccttatttattttcagaaagagaatatataaaggaaagcaaaatgtgtttgaatacataacatttcttaattgaagtacatttaattgaagttaaCCAGTGAACGGGAATCCCATTGCAACATCACAGCTCTGGATACCGGCGTCTTTACAGAGTCGTCCGCTGCTGTTGACTAATGCACTGtgttctctgtgtttaaaaacagtATGTTCTTTGGCGgaaattagtttgtttgtttgtttcgtaaaaataaacacttcgTTTTGCAAGACACATATCGAGTCCCGGTATAAAGAGAGCATGTGCCGCTCAGCATTGGAGAGAGGAAGGCCAGAGTATTCATTCGCCAGTGTTGCTGAGACTACAGAGAGATGAAGAGTTCACTGATTGTGGCTACTGTGCTGCTGCTGGCGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGAGGGAGAGGCCAGAGATGCACTCGCACCGTGGAGACGTGTTACAGCTCTAATGATGTCTGCATCAGCGCCTACTTCCTCCCACCCGCCTCTGGTTTCTTCCAGAGATGTGGCAAGTCGTCTGAGTGTGCCATATACAGCACCAATCAAATAATCCAAGCCCACTGCTGCTACAGCGACCTCTGTAACTGAGTGACAAGGGTgggatggggatgggggtgggggttgtaaAGGTCCATTATCAGTCAAGCTTGGGAACCTCTCTTGAGCCTGATTCTGTGACATTGTTGAAATAAACTGCACTGAAACAGAGTACACATTGTCTCACTTGTGCCTTTCTCCTTTCTTGTGTCAATCATGCATTTTCATAGATAGATGCATGCATAGTATACATAGATCAAcagatatac
>TU169765
GTTTTTGGATGTGCACCTGGGGTGCCGATATGTATCTCCCGGTACAGATTGCTACTATGTCCGCATTCCGCTTTTTGTTCTCATAAgatgtaaatacaattttcagcTCGGACCAGATAGCTGATAAAACAAGCCCGTCTAATGCAACATAttcccttatttattttcagaaagagaatatataaaggaaagcaaaatgtgtttgaatacataacatttcttaattgaagtacatttaattgaagttaaCCAGTGAACGGGAATCCCATTGCAACATCACAGCTCTGGATACCGGCGTCTTTACAGAGTCGTCCGCTGCTGTTGACTAATGCACTGtgttctctgtgtttaaaaacagtATGTTCTTTGGCGgaaattagtttgtttgtttgtttcgtaaaaataaacacttcgTTTTGCAAGACACATATCGAGTCCCGGTATAAAGAGAGCATGTGCCGCTCAGCATTGGAGAGAGGAAGGCCAGAGTATTCATTCGTACGTATTGTCTTTTAATGTCATGTTGAGTTGTAGCATATATATAGAACTTAGTGCATACAATTACCTTTGCACCACcacttaaaaacatatacacatgtAATTCGATTGTATTtttgatgatgatattattatttattataactattaataataatggctgTATGATTAACACGTGTACTCAAGGCCAGTGTTGCTGAGACTACAGAGAGATGAAGAGTTCACTGATTGTGGCTACTGTGCTGCTGCTGGCGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGAGGGAGAGGCCAGAGATGCACTCGCACCGTGGAGACGTGTTACAGCTCTAATGATGTCTGCATCAGCGCCTACTTCCTCCCACCCGCCTCTGGTTTCTTCCAGAGATGTGGCAAGTCGTCTGAGTGTGCCATATACAGCACCAATCAAATAATCCAAGCCCACTGCTGCTACAGCGACCTCTGTAACTGAGTGACAAGGGTgggatggggatgggggtgggggttgtaaAGGTCCATTATCAGTCAAGCTTGGGAACCTCTCTTGAGCCTGATTCTGTGACATTGTTGAAATAAACTGCACTGAAACAGAGTACACATTGTCTCACTTGTGCCTTTCTCCTTTCTTGTGTCAATCATGCATTTTCATAGATAGATGCATGCATAGTATACATAGATCAAcagatatac

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU169761 False 854 TUCP 0.49 7 13082221 13101480
TU169763 True 2565 lncRNA 0.42 4 13087845 13101480
TU169764 False 1018 TUCP 0.44 4 13082221 13084161
TU169765 False 1204 TUCP 0.42 3 13082221 13084161

Neighbor

gene id symbol gene type direction distance location
AMCG00012208 NA coding downstream 89522 12982329 ~ 12992699 (-)
AMCG00012203 NA coding downstream 121329 12955005 ~ 12960892 (-)
AMCG00012204 NA coding downstream 143401 12929787 ~ 12938820 (-)
AMCG00012205 NA coding downstream 158544 12903257 ~ 12923677 (-)
AMCG00012202 NA coding downstream 195422 12859761 ~ 12886799 (-)
AMCG00012214 NA coding upstream 34263 13135743 ~ 13143480 (-)
AMCG00012221 NA coding upstream 54217 13155697 ~ 13162263 (-)
AMCG00012219 NA coding upstream 106611 13208091 ~ 13222556 (-)
AMCG00012220 NA coding upstream 157930 13259410 ~ 13266847 (-)
AMCG00012225 NA coding upstream 179616 13281096 ~ 13291869 (-)
G135161 NA non-coding downstream 130096 12863860 ~ 12952125 (-)
G135160 NA non-coding downstream 241908 12792948 ~ 12840313 (-)
G135151 NA non-coding downstream 450162 12578865 ~ 12632059 (-)
G135148 NA non-coding downstream 492414 12566673 ~ 12589807 (-)
G135008 NA non-coding downstream 719381 12362535 ~ 12362840 (-)
G135184 NA non-coding upstream 49035 13150515 ~ 13214542 (-)
G135193 NA non-coding upstream 169332 13270812 ~ 13279294 (-)
G135202 NA non-coding upstream 220251 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 315925 13417405 ~ 13418804 (-)
G135333 NA non-coding upstream 650430 13751910 ~ 13818084 (-)
G135164 NA other downstream 170334 12895168 ~ 12911887 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other downstream 280153 12764572 ~ 12802068 (-)
G135152 NA other downstream 378736 12702450 ~ 12703485 (-)
AMCG00012196 NA other downstream 381491 12637093 ~ 12700730 (-)
G134981 NA other downstream 859036 12221205 ~ 12223185 (-)
AMCG00012222 NA other upstream 130142 13231622 ~ 13232389 (-)
AMCG00012226 cd2bp2 other upstream 194939 13296419 ~ 13300421 (-)
AMCG00012233 NA other upstream 418186 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 509006 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 603366 13704846 ~ 13705612 (-)

Expression


Co-expression Network