G135202


Basic Information

Item Value
gene id G135202
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13321731 ~ 13329044 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169812
CCGGAAGTTCGTCCCATAATGCGCGCAAAGCATCATGGTATGTAGGAATATGATGGATAGGAAAGAACTCATTgtaatcccacaatgcaccactCCAGGAAAGATGGGTTTTCGAACATGAAATTGGCGGAGTTGACTATCTTGTCTAGATAGAGGGACTTCGCAGCTGGGAAAAGCTGTGCAACTTTCTGCTCTATTGTTCACCCGAGAGCCCTGGccctgtgtgagagagggagggagacggaGTTGTCTCTGCTTTGTGGATCCACTGGCTCTAAACACACAGCTCAGCTGGGGGAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGACAGACTGAAGAAGGTGGAGGAGATCAGACAAGCGGTGGAGCTCAGCAGACTTGGAGCCCAGAGAGAGGCTGAGGACAGTGAGCAGGTCTTCAGGGCTCTGGTGTGCTCCATTGAGAGAAGCCAGGCTGAGCTGCTGGAGCTGATTGAGGAGAAGCAGAGAGCGGTGGAGAGGCGGGCTGAAGGGCTCATTGaagagctggagcaggagatCACTGAGCTGGAGAGGAGACGCACTGAGCTGGAGCAgctctcacacactgaggaCCACATCCACTTCATACAGAGTCTCCCAGCCCTGCGCCCCCCTCCACACACCAAGGACTGGTCTGACGTcactgtgacctctgacctctgtctGGAGGCAGCTGGAGCAGAGACTCAGGGAGGGACTTGAGGAGCTGCCAGAGATCAAGCTGAAGACGATCCAGCAGTGtgcagTGGATGTGACTCTGGACCCCAATACAGCTCATCCCCATCTCATCCTGTCTGAGGATGGGAAACAAGTGAGACATGGAGACAAACGACAGGCTCTCCCTGACAATCCAAGGAGATTTGATCCATGTCCCTGTGTCCTGGGAAAGGAGGGTTTCAGTTCAGGGAGACACTACTGgcaggtggaggtggggggtgtgACTGACTGGGCTTTAGGAGTCGCCAAACAATCCATCAACAGGAAGAAGCGGATTACACTGAGCCCCAAGCGTGGTTACTGGACTGTGTGGCTGAAGAATGGGAATGAATACAGGGCTCTTGTTAGCAACTCCCTACTCCTCCCCCTGAGCCTGAAGCCCCAGACGGTGGGGGTGTTTGTGGATTATGAGGGGGGGCAGGTCTCCTTTTACAATGTGGAGGCCAGGTCTCATATCTACACTTTCACTGACACCTTCACAGAGAAACTCTATCCATACTTCAGCCCTGGTCTCAATAATGGAGGTGAAAACGCAGCCCCACTGATCATCTCTCCTGTCCGTCCCACAGACTGAAGGAGGCAGATCCTCTGTGGGGGGGCAGCAGGAGCAGTAGCCAGTGAGAGTAATAACAGTGAGATTCAGATCAGTGCTCTCCAGCCCCAGAGGGAGTCATTCAGGGTGTGAGGGCCGTCAGTCACAGATCAGGCGCTGCTGTCTGTGAGCCCCACACTGGTGTAGAGCAGCGAGGAGCTCAGAGCCGACACactgaaggctgttcaaacCCTCAGACTGATGGCTGCTTTTGTGAGCGGCTTCCCTCTGCTTACTTAAAGGCAGCCTGGACTCTGTTATGGCTCTGTCATCAAGTCATGCGTAATGCCAGATTCCCTATTTTCTGTGAACTCAGTTGTCATACTGACATAGGAGTAAATATTAGGTGGTGTCAAAGGTCAAAGTTCATGCTGATGTAGAGTCCTTGATTTGTAAGCTTCTGCTTTGACAAACTTTTCCATTGGAATCTGTAATTTTGCAGAATAACTCTCTCAAATGAAGCCTTTGCTGTGAGTGGAGATTGAAAGATTCTTACGGACACAACTACATAATAGAATTAGTTTTAATCTGTAAAAGTCCCTCAGTCTCAGGACTGATGATGTACAGTACTATCTCTGTGATACTTATGAATGTTTTAATAGCTAaggtttgaaatgtttattttctatagtAAGCATTCACTGTCAATAAACCATTGTCCATAATACCACTGTAGTATATTCAGTTGTAACAGTGCTCCGGAGATGGCCGTTCAGGAAGACTAGggtaaagtttttctaaagaacatgctATCTTATAGATGACTCCCTGGTTACCTACATGATGTCAATGATGAACCCCAAACTTTATCATGGActtctttgtcttctgttctctttaTTGCCTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169812 True 2183 lncRNA 0.50 6 13321731 13329044

Neighbor

gene id symbol gene type direction distance location
AMCG00012225 NA coding downstream 29862 13281096 ~ 13291869 (-)
AMCG00012220 NA coding downstream 54884 13259410 ~ 13266847 (-)
AMCG00012219 NA coding downstream 99175 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 159468 13155697 ~ 13162263 (-)
AMCG00012214 NA coding downstream 178251 13135743 ~ 13143480 (-)
AMCG00012232 NA coding upstream 136428 13465472 ~ 13486579 (-)
AMCG00012230 NA coding upstream 167443 13496487 ~ 13506591 (-)
AMCG00012234 NA coding upstream 181171 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 207151 13536195 ~ 13539367 (-)
AMCG00012237 NA coding upstream 218040 13547084 ~ 13552454 (-)
G135193 NA non-coding downstream 42437 13270812 ~ 13279294 (-)
G135184 NA non-coding downstream 107189 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 369606 12863860 ~ 12952125 (-)
G135160 NA non-coding downstream 481418 12792948 ~ 12840313 (-)
G135151 NA non-coding downstream 689672 12578865 ~ 12632059 (-)
G135217 NA non-coding upstream 88361 13417405 ~ 13418804 (-)
G135333 NA non-coding upstream 422866 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 525514 13854558 ~ 13856288 (-)
G135416 NA non-coding upstream 554758 13883802 ~ 13884899 (-)
G135417 NA non-coding upstream 555885 13884929 ~ 13886535 (-)
AMCG00012226 cd2bp2 other downstream 21310 13296419 ~ 13300421 (-)
AMCG00012222 NA other downstream 89342 13231622 ~ 13232389 (-)
G135172 NA other downstream 220251 13082221 ~ 13101480 (-)
G135164 NA other downstream 409844 12895168 ~ 12911887 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other downstream 519663 12764572 ~ 12802068 (-)
AMCG00012233 NA other upstream 190622 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 281442 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 375802 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 761024 14090068 ~ 14094688 (-)
G135814 NA other upstream 1190786 14519830 ~ 14523063 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_03197800_03232263 BTR18 coding CI01000319 null 3197761 ~ 3232441 (-)