G135255


Basic Information

Item Value
gene id G135255
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13532698 ~ 13625360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169892
CAATGAAAAAGgcattcttgtttttattggaCTGGATACAGGCTCTTACAGCAGGTCCTGATACACTGCAGCACGTTCAAAAGAGAGGATCAACTTTTTAAAGTGGCAAACCGATCAGTCAGTCAGCAGTCAATCTCTaaccctctctgtgtgtgtgtgtgtaaatagaAGTCATGCAGCTCTAAAATACTACAGGTGGGCCACCACAGAATATCAatgacacacccacacactccaCACTCCTGCAACCActaccaaataataataataataataataataataattattatgtaaatagACAGTAACAGAGGAACGTGTTAGGGCTAAGGTTAAAGCATTTCCCCAGCtcccacacactgcacacacccTAAGTTAACTCTAGTACtaaaaactcacacacacacgcttccGTTCTGATCtctactcactcacacacacaaccacccACCCACGGCTTAaaatctgtgtattttattttagtctctttaaatgtattcagagcAAATTCACACTATCATTTACACTAAGAGGAGGGCTATATTTTGTCTTAGTCGAGCTGAATGTCTCATTTGGCCTTGTATGACGCAAAGGTTATCCCACAGTGAGGGGCTTCTTCCCGATTCTATTTTAATTGGCATGTCTCTCTCACCCATTTGGCTTGACACCAATTCATCAATTATCTGGTAATTAGGAGGAAGTTTGGTCTTAACAAGCGACGAGATGTATAAGTAATGACAAGGAccataaattacacaaattgtAGGGCCTACAaacacgccccccccccccacacacctcaCCCTGTTGTCCCCTCCTTCACATAGTCCtgtggtgttcattaataagaTTCCCTTCCAGGTGTTTAAGAGTTATTATATCTGGGAAATGATTTAGTGTGACACTGATCAGCAGCCAGTCTGGTGCCACACTGAAATGCTTACCCCCTCCCCCTGACTGAAACCATCCTAATGCAAAAGCTGCTCTAAACACATCATAAAATGACTTCCTATTTTCGACACCATTCAATCTGATTCATAGTGACATCGCTTCTTGCCACAATCAATACAGTTAACACGTGTCCGGCCTGAATACTAGTTTAGATTTCCCGAGTCCGACTTGATGCTCATGCATATTCATTCAGGTGTGGCTTTGTATTTGAACAGGTGATTGGTTTAGGTACTATTCAGAGCGAATTGTTCTCCAGGTCAATTCTAGACTCCTCTGTGGCAAATGTATTCACTATATGTACATgtaaacatatgtatatgtgcattATATTAAGATAAAATCTAAACAGACCCATATATTaactaaaatgtatgttttagtagtatatatttattagtattatatgcatataaatcaacaaaacataTCATGAACTTGCAAATTTAACTGAAAACCATTCCAATTTCTGATGGGAAAATATAATGTCCCTGTGTCAATCAGATTGTTGAAATATGAAGTTATTTTATGGTGAGTGTTCATATGGAGTTGAGCAGCAGCGGTTGTATTCTGTTGACAGAGAAAAACACGTCTGCAGGACTATATATATCCCACAATTCCCTGCACAAGCCAGGACAGAACTACCTAAAATTAAGTTCACCATCACGTTCATAAAGTGTCTCTGCCTGAAGCTAGTCTGGTGTCACACTGAAATCCTTCCCCCCTTTCTATTCACCACCTGATGTGGAATTTAAGTCCAAACCAGTCAGTTGCTGGGTGACTGGGGGTTTGGCAGGGACTGTTGGTTGATTCGCCATTATGACACCAAACGAAGAGTGCAATTAGGGTTGCGTACAGATGCTGAGGGGCTCCCAGGCTACAAACTGAGCTGCTCTTTCCCCTGTGATGGGGCTTTAACAAACACACCAGTGGAGCAAGCTACAGCTCGAAAAgaactaaatacatttaattaagaatcaaaaaacaaacgacaacaaaaaaaaacataaaaatcaaaaaACTGCAAcgagaagaaaacacaaaaaaaaaaatccacacagATTACAACAGGCACCCGTCAAAGACTACACCACTGTGTCCCATTAAACCCTATCATCTCCTTCCTCTCTCCGCTGTCCCGCTGTGTTAATATAAGGTTTCTCTCCTCCGTCACTGAGTGTCCAACTGCGTGCGTTTTTAAAAAATCAGGTTTTCTGGTTCAGATCTAAGGGATCATGATCCACTGACTGACTGGGAGGGAGAGGTGAGGTGGGGGGGTCATTTCGGTGTGGCACAAAATGGGGTTCAGAGCATGGTGGGTGACGTAGGGATGTGCTGCCCTGCCCTGAATGAACAGCCGAGTGAAGAGTTCAGCGTTGGAAGGGAACAAAAATCAGACTCTGCCCAGTTAGAAAAGGTAGAGTCTTCAGGGGGAGAGGGTGTCTTTGGGGGTTGTgtccagaaagagagagaaggaaggaaggagggagggagagagagagagagaaagagagagaagttgTTGCAGCACAGAACGCACTGACTTTTCTTTCGGATGGGGAAAAAATTGGATAAGAAACTACAATGCGTGTCCcatcttgctctctctctgccttcgTTATCTGTGTCAATAACCCTGTACAGCCTGACAGAAGTAAAAAGACCACTGGAGGATACAGGGAAATGGGGCTCTACTCACTAGTGGAGTCCTAACCCAGTCCTGGCACAGTAGCATTtaaagagatttttattttcctttttaaaaggaTATGCCACAATAGAGGCCGGGTCTCCCCTAACTAGGGTGCCAGCGCATCGAGGGCACCACGCAGGAGACGGACACCCTGATGCTGTGCCAGGGGGCTGGGAGGGGATGGCACCACAATAAAAAGGGAAGTCTGTGTACTGTTGCCCTTCAGTGTgtgtcttcctctctcccagtgtTGACTGTGTGAACTGTTTTAGTGAAgcaaattcttaataaaacgtTCAAATATT
>TU169893
CAATGAAAAAGgcattcttgtttttattggaCTGGATACAGGCTCTTACAGCAGGTCCTGATACACTGCAGCACGTTCAAAAGAGAGGATCAACTTTTTAAAGTGGCAAACCGATCAGTCAGTCAGCAGTCAATCTCTaaccctctctgtgtgtgtgtgtgtaaatagaAGTCATGCAGCTCTAAAATACTACAGGTGGGCCACCACAGAATATCAatgacacacccacacactccaCACTCCTGCAACCActaccaaataataataataataataataataataattattatgtaaatagACAGTAACAGAGGAACGTGTTAGGGCTAAGGTTAAAGCATTTCCCCAGCtcccacacactgcacacacccTAAGTTAACTCTAGTACtaaaaactcacacacacacgcttccGTTCTGATCtctactcactcacacacacaaccacccACCCACGGCTTAaaatctgtgtattttattttagtctctttaaatgtattcagagcAAATTCACACTATCATTTACACTAAGAGGAGGGCTATATTTTGTCTTAGTCGAGCTGAATGTCTCATTTGGCCTTGTATGACGCAAAGGTTATCCCACAGTGAGGGGCTTCTTCCCGATTCTATTTTAATTGGCATGTCTCTCTCACCCATTTGGCTTGACACCAATTCATCAATTATCTGGTAATTAGGAGGAAGTTTGGTCTTAACAAGCGACGAGATGTATAAGTAATGACAAGGAccataaattacacaaattgtAGGGCCTACAaacacgccccccccccccacacacctcaCCCTGTTGTCCCCTCCTTCACATAGTCCtgtggtgttcattaataagaTTCCCTTCCAGGTGTTTAAGAGTTATTATATCTGGGAAATGATTTAGTGTGACACTGATCAGCAGCCAGTCTGGTGCCACACTGAAATGCTTACCCCCTCCCCCTGACTGAAACCATCCTAATGCAAAAGCTGCTCTAAACACATCATAAAATGACTTCCTATTTTCGACACCATTCAATCTGATTCATAGTGACATCGCTTCTTGCCACAATCAATACAGTTAACACGTGTCCGGCCTGAATACTAGTTTAGATTTCCCGAGTCCGACTTGATGCTCATGCATATTCATTCAGGTGTGGCTTTGTATTTGAACAGGTGATTGGTTTAGGTACTATTCAGAGCGAATTGTTCTCCAGGTCAATTCTAGACTCCTCTGTGGCAAATGTATTCACTATATGTACATgtaaacatatgtatatgtgcattATATTAAGATAAAATCTAAACAGACCCATATATTaactaaaatgtatgttttagtagtatatatttattagtattatatgcatataaatcaacaaaacataTCATGAACTTGCAAATTTAACTGAAAACCATTCCAATTTCTGATGGGAAAATATAATGTCCCTGTGTCAATCAGATTGTTGAAATATGAAGTTATTTTATGGTGAGTGTTCATATGGAGTTGAGCAGCAGCGGTTGTATTCTGTTGACAGAGAAAAACACGTCTGCAGGACTATATATATCCCACAATTCCCTGCACAAGCCAGGACAGAACTACCTAAAATTAAGTTCACCATCACGTTCATAAAGTGTCTCTGCCTGAAGCTAGTCTGGTGTCACACTGAAATCCTTCCCCCCTTTCTATTCACCACCTGATGTGGAATTTAAGTCCAAACCAGTCAGTTGCTGGGTGACTGGGGGTTTGGCAGGGACTGTTGGTTGATTCGCCATTATGACACCAAACGAAGAGTGCAATTAGGGTTGCGTACAGATGCTGAGGGGCTCCCAGGCTACAAACTGAGCTGCTCTTTCCCCTGTGATGGGGCTTTAACAAACACACCAGTGGAGCAAGCTACAGCTCGAAAAgaactaaatacatttaattaagaatcaaaaaacaaacgacaacaaaaaaaaacataaaaatcaaaaaACTGCAAcgagaagaaaacacaaaaaaaaaaatccacacagATTACAACAGGCACCCGTCAAAGACTACACCACTGTGTCCCATTAAACCCTATCATCTCCTTCCTCTCTCCGCTGTCCCGCTGTGTTAATATAAGGTTTCTCTCCTCCGTCACTGAGTGTCCAACTGCGTGCGTTTTTAAAAAATCAGGTTTTCTGGTTCAGATCTAAGGGATCATGATCCACTGACTGACTGGGAGGGAGAGGTGAGGTGGGGGGGTCATTTCGGTGTGGCACAAAATGGGGTTCAGAGCATGGTGGGTGACGTAGGGATGTGCTGCCCTGCCCTGAATGAACAGCCGAGTGAAGAGTTCAGCGTTGGAAGGGAACAAAAATCAGACTCTGCCCAGTTAGAAAAGGTAGAGTCTTCAGGGGGAGAGGGTGTCTTTGGGGGTTGTgtccagaaagagagagaaggaaggaaggagggagggagggagagagagagagagagagaaagagaga

Function

NR:

description
PREDICTED: retinoic acid receptor beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169892 True 2946 lncRNA 0.43 2 13532698 13587530
TU169893 False 2471 lncRNA 0.42 2 13532698 13625360

Neighbor

gene id symbol gene type direction distance location
AMCG00012227 NA coding upstream 4728 13525684 ~ 13527970 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding upstream 209309 13317915 ~ 13323389 (+)
AMCG00012223 NA coding upstream 225175 13303056 ~ 13307523 (+)
AMCG00012218 NA coding upstream 330306 13187382 ~ 13202392 (+)
AMCG00012212 NA coding upstream 349868 13166600 ~ 13182830 (+)
AMCG00012242 NA coding downstream 70730 13696090 ~ 13700551 (+)
AMCG00012241 NA coding downstream 115879 13741239 ~ 13743991 (+)
AMCG00012243 NA coding downstream 162020 13787380 ~ 13788233 (+)
AMCG00012249 NA coding downstream 206221 13831581 ~ 13836820 (+)
AMCG00012248 coro1c,LOC106937262,LOC105025598 coding downstream 213095 13838455 ~ 13841993 (+)
G135250 NA non-coding upstream 1405 13530772 ~ 13531293 (+)
G135226 NA non-coding upstream 48220 13477562 ~ 13484478 (+)
G135138 NA non-coding upstream 104699 13427351 ~ 13427999 (+)
G135137 NA non-coding upstream 111647 13417405 ~ 13421051 (+)
G135131 NA non-coding upstream 135062 13372603 ~ 13397636 (+)
G135280 NA non-coding downstream 40274 13665634 ~ 13665881 (+)
G135282 NA non-coding downstream 46754 13672114 ~ 13673799 (+)
G135358 NA non-coding downstream 276947 13902307 ~ 13904536 (+)
G135359 NA non-coding downstream 279356 13904716 ~ 13905291 (+)
G135355 NA non-coding downstream 280115 13905475 ~ 13906347 (+)
G135240 NA other upstream 12204 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 23899 13471101 ~ 13508799 (+)
G135058 NA other upstream 107339 13422435 ~ 13425359 (+)
AMCG00012217 NA other upstream 255727 13269196 ~ 13276971 (+)
G135070 NA other upstream 558645 12968377 ~ 12974053 (+)
AMCG00012245 NA other downstream 181853 13807213 ~ 13817545 (+)
AMCG00012247 NA other downstream 225018 13850378 ~ 13855055 (+)
AMCG00012253 NA other downstream 436877 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 548553 14173913 ~ 14183167 (+)
AMCG00012268 NA other downstream 621403 14246763 ~ 14296659 (+)

Expression


Co-expression Network