G135257


Basic Information

Item Value
gene id G135257
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13537246 ~ 13541117 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169896
CTCCCACTCTTATTCACTTTGCATTGCTAACCCCTCCATCTACGCACCTTGAACAGCCGCTGCTCCTCTGGCACCCTCTTGAGGATGCCCTCTACGATGCGCTTCAGCTCATACACGGTGGTGGATTCCTTGGCGTCGGTGAAGATGGTCGTCTTGTGACGCCGAATCATAAGGAACACATCCTGCCGGGGAGACGCCACACACTCACTGCCACGTTCTCCCACCGGCACTCAGCTTCGCACCGGGTTCGAGCCGGGGCCGCGTATGTGTCACTTGGACTCGCGCTAAACAGTGCTGCTGGTTGAACTGGGTTAGTGGAACCAGTAAAGGCACCCTTTGAAGGGATATTGAGTTTAAttgaggggaggggggacagAGGAAGAAAGAAGGCTGGCAGTGAAAGAATGGGGGAAAATAGACAGCAGAAGATAGTGAAAGGAGGTTAAAAGAGAGGTGGGGGAAGGAGTGGGAGAAACAGAAGGgggagagaaggacagaggACTAACAAGACCAACATCAACACTAAACTATGCTGCTTTATGAATATGTGGTGTGGATGTGACCGGTGCACTTACACATTGCTATAGACCAATATGAACCACTGTGGTATAATGGAGTAGTATTGACCAGTTATCATCAAATCGAACAATAGTGCATCAAAGCTATGTCACTGTTCTTTGACCAAAAAGAAGTAGCGAGTGTTACTGTGATTATGGGAATGAATGACACTCCCATTGAGCACACGGAACAGGCGCAGACACTCGAAACTGTGCCGGACTTTATTGAGACTTAACAGCGGCGGGGCTCATTAGAAGtagtgattttaatttaaaaaaggtttgcaATCGCGTCcaatgacccccccccccacaaccccGACAATTCCCGAATTCCCGATTCCAGACAGCTGCGTTCCAGAACGGTTCGAAGCCAGTGGGGTCCCGGAATGCGCAGTCATGGACGTGCGTTGCGCAGCGGTCCAGTTGGtgcaaataaacaaaggaaATCGCAAACCACTGAGCTAATGTGTGCCCAGATACCCCGTAACGCCTTTAGGGGGGATGTACACACGAATGCGTGAGTTAAAACGGTGGATTGGACGGCGTTTATCCGCAGTCGGCATTCGAGACATTTCCCAAACGTCGGCAGCCTCTGTTCGTCGACAGTTACATTTCCTTTCGCTTCACGCCGTCTTTCACTCGTTAGGGCCGAGAATCCCCGATCGGATCCGCGGAGGGCTCTTCCCCGCTCCCCGCCGGCTTGTTTACGCGCTTGAATATCGCCTGGTCTTGAACTAGGCCTCCTCTCCACAGTCCAGCCACCATCTTTTCTCTGTCTCCCCGATACGGCAGTACAACACACCATAACAAACCGCAATACAGACTCACACTTCCAGCTTAAAACTCTCCTCTTCCACTCGACGGACCCGGTTTATCTCCGCTCATCGGGCGGCATATGGATCTATAATCTATCCCCCCCGTAACAGCAGGTCGTTGTGGGTGCCCGGTCTTTGCAAAAcggtgtatttattacatttcgcCGTTTCCCTTTCTCACTCACCATTTCTCTCCGTCGGTTGCGATCGCCTTAGTCCTCCAcgatcccacaatgcactgcgcGGCTCAAGGCTCCCCAGCAGCTGTTCCTCCGCTTTCCCACAAAGCTCGTCTACCGGAAGACGAGCGCACGATTAAATCCCAGTGTAGTTTcgcacatttatttgttttgctagAGTTGGCCTTCAGGAACACGCTTTAGTAATGCGATTAcgaataataacaacaaccgTTATGACTGCAAAGGTTACAGgagGACACTTTCTCCCATGTCCCAGGCTGTGCCTTCTCCTCACCCTCATCCgttgacctctgacctgtaCCGAAGACTGCCGTGCTTCTGCAGATAGACGCAGTGCACTCGGAAGTGACCGTTAAGTGACGCAGCATCTGGCTTCTCCTCCCCACAGTACAGAGACATATACAGGCTGCAGGCTGCGCTGTGTCGCTATGAGCAGCCCAGAGTCACAGCCTCCTCTCTCCAGCCCCGTTCCCTCTCTCACCATCACAACTCAGTGCCTCAGAGCGCCACGCTGCCCACCGCTCCAGTGACTGGGCTACACTCTTCCTCACTTCcatccctctccttctctctctcccatcccCTTTTCCCAGCCCTTAAATAaacatctctctttctccctccctgtccctctctctccctgcccctctgCCAGTGTCTTTCCCTGcagccctccctccctttctttctctccctgcctgctctctctctcccttatatttttctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169896 True 2309 lncRNA 0.52 2 13537246 13541117

Neighbor

gene id symbol gene type direction distance location
AMCG00012227 NA coding upstream 9276 13525684 ~ 13527970 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding upstream 213857 13317915 ~ 13323389 (+)
AMCG00012223 NA coding upstream 229723 13303056 ~ 13307523 (+)
AMCG00012218 NA coding upstream 334854 13187382 ~ 13202392 (+)
AMCG00012212 NA coding upstream 354416 13166600 ~ 13182830 (+)
AMCG00012236 NA coding downstream 36 13541153 ~ 13543947 (+)
AMCG00012229 pelo,LOC107674509 coding downstream 8937 13550054 ~ 13556902 (+)
AMCG00012242 NA coding downstream 154973 13696090 ~ 13700551 (+)
AMCG00012241 NA coding downstream 200122 13741239 ~ 13743991 (+)
AMCG00012243 NA coding downstream 246263 13787380 ~ 13788233 (+)
G135250 NA non-coding upstream 5953 13530772 ~ 13531293 (+)
G135226 NA non-coding upstream 52768 13477562 ~ 13484478 (+)
G135138 NA non-coding upstream 109247 13427351 ~ 13427999 (+)
G135137 NA non-coding upstream 116195 13417405 ~ 13421051 (+)
G135131 NA non-coding upstream 139610 13372603 ~ 13397636 (+)
G135280 NA non-coding downstream 124517 13665634 ~ 13665881 (+)
G135282 NA non-coding downstream 130997 13672114 ~ 13673799 (+)
G135358 NA non-coding downstream 361190 13902307 ~ 13904536 (+)
G135359 NA non-coding downstream 363599 13904716 ~ 13905291 (+)
G135355 NA non-coding downstream 364358 13905475 ~ 13906347 (+)
G135240 NA other upstream 16752 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 28447 13471101 ~ 13508799 (+)
G135058 NA other upstream 111887 13422435 ~ 13425359 (+)
AMCG00012217 NA other upstream 260275 13269196 ~ 13276971 (+)
G135070 NA other upstream 563193 12968377 ~ 12974053 (+)
G135264 NA other downstream 43153 13584270 ~ 13585916 (+)
AMCG00012245 NA other downstream 266096 13807213 ~ 13817545 (+)
AMCG00012247 NA other downstream 309261 13850378 ~ 13855055 (+)
AMCG00012253 NA other downstream 521120 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 632796 14173913 ~ 14183167 (+)

Expression


Co-expression Network