G135358


Basic Information

Item Value
gene id G135358
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13902307 ~ 13904536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170036
TGTATatcacaaacattacaaaaaaatgtttaaaaactaaataaaaagcgAAGTACCAAAGCCATACAAAGAGCTGATATCAAACCTATAGAATGTGTTATAAGAAACCATTGGAGTAACCATTATGTCAAGTTACAAGAAACTATTGGGATAGACTTGGCCagaattcctttaaaaaatgtactttgcttgaTACTTGTcaatatatatacttacatacGTATAGGTACTGTATGTGGGTGTACATTTGAGCAGAGAGATATATACAGAATTCTGTgtgtataaattaaaatcatcatcacgggtgttagtagtagtagcagcagtagtgtcactgcacagaatatgtttctacttatagaataacctgagaaaatatggattttcggtggagttcccctttaagccAAAGTTTCAGGCTAGATTTGTCAGTGGATCGTATTGGATTACAACATCTATTATTTCCGATATCCGATCCAGTGTTTTTGGCCTGTATTGGACCGATAACGATATGGATTATCGGATTGGCGCATCTCTAGAAACAACTACACACATAATTGTCATTTCATTAGAATTGATATCTCCCTAACAGTCAACCTCTCTTGACACTGGAATATCACAGATTAATGGCAGTCAGCTGTGTGGgtttaaaaacactgtaatcCAGAAAATAACATGATGGCAAACAGTGCGCAAACTCCATGTGTTGACATTGCTGTGTGTTGACATGGTATAATTCTGCCAGTCAGTCACTGTGTAGcacacagtgactgactggcagaattataataaaagggagctttttatacatgtactaaatcaatttacaaattacGAAATCTATGCTCCACAGTGGGCACACCAGAGACACCAGACTCTGTCTCACTCCCAGCACATCTCCACCCTGACATGCACTCACAGATTCTTCCTGAGAATCCGTCCTTTCTTCACTGACTAACGACTGGTTATTGGCTTTCGTTTGCAACATGTGTGTCTTTTACTTCGAGTAAAAACTGAAGTCCAAAGTTGCAACTTAAGACCACGGCTCAATTTAAAATAGCTTTAGGCCCAGGATTATGCAGTGTGCGAGGCCTGTCCTATctgtacatattattatttatttgtttattgtcagaaacccttatccagggtgatttacaggatacaagagcaTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170036 True 1177 lncRNA 0.38 2 13902307 13904536

Neighbor

gene id symbol gene type direction distance location
AMCG00012246 LOC106606385,LOC102779737,LOC106597183,LOC107550235,LOC107550268 coding upstream 17177 13882244 ~ 13885130 (+)
AMCG00012244 LOC105897688,LOC103034594,LOC101477563,LOC103367324,LOC108280818,LOC105894037 coding upstream 25165 13860050 ~ 13877142 (+)
AMCG00012248 coro1c,LOC106937262,LOC105025598 coding upstream 60314 13838455 ~ 13841993 (+)
AMCG00012249 NA coding upstream 65487 13831581 ~ 13836820 (+)
AMCG00012243 NA coding upstream 114074 13787380 ~ 13788233 (+)
AMCG00012255 NA coding downstream 63995 13968531 ~ 13977224 (+)
AMCG00012254 NA coding downstream 74934 13979470 ~ 13982769 (+)
AMCG00012252 LOC107755578,LOC107690283,LOC107729173,LOC107590562,LOC107567734 coding downstream 79928 13984464 ~ 13989166 (+)
AMCG00012251 NA coding downstream 144416 14048952 ~ 14057554 (+)
AMCG00012260 NA coding downstream 195564 14100100 ~ 14117969 (+)
G135282 NA non-coding upstream 228508 13672114 ~ 13673799 (+)
G135280 NA non-coding upstream 236426 13665634 ~ 13665881 (+)
G135255 NA non-coding upstream 276947 13532698 ~ 13625360 (+)
G135257 NA non-coding upstream 361190 13537246 ~ 13541117 (+)
G135250 NA non-coding upstream 371014 13530772 ~ 13531293 (+)
G135359 NA non-coding downstream 180 13904716 ~ 13905291 (+)
G135355 NA non-coding downstream 939 13905475 ~ 13906347 (+)
G135366 NA non-coding downstream 23452 13927988 ~ 13956305 (+)
G135356 NA non-coding downstream 41780 13946316 ~ 13948827 (+)
G135506 NA non-coding downstream 322454 14226990 ~ 14232263 (+)
AMCG00012247 NA other upstream 47252 13850378 ~ 13855055 (+)
AMCG00012245 NA other upstream 84762 13807213 ~ 13817545 (+)
G135264 NA other upstream 316391 13584270 ~ 13585916 (+)
G135240 NA other upstream 381813 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 393508 13471101 ~ 13508799 (+)
AMCG00012253 NA other downstream 157701 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 269377 14173913 ~ 14183167 (+)
AMCG00012268 NA other downstream 342227 14246763 ~ 14296659 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other downstream 471097 14375633 ~ 14377651 (+)
G135544 NA other downstream 473136 14377672 ~ 14378695 (+)

Expression


Co-expression Network