G135595


Basic Information

Item Value
gene id G135595
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14570375 ~ 14610737 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170353
TTTCCAGTGTCTATTCGTTCATCAGGTAAATTATTCGGCGAGTCGCTCGCTTTCATACGAAAAAATTCAAGTATCGGTCGGGAAACAAACAAAgcgaaaaacaaaaactgaacacaGCAACAGAAGAGCCAAAAAGGTGAAAGTAAAAGCGGTTGACACTGAGAAACCAGGACCAAGTCAATGAGGCCAAACACTCCCTCAGACAGCACACACATCCACCActcactccctcacacacacacacactcactcactcggACACCATACACACACGGCTAATTGGTCACCATTATCCAAACCACACTCTCCCCCCTCCCATCTCACATTTTTCTCACAAAGATATAAAACGCCCCTACAGAAAATCATAACACATGATCTCTCCCAATTTCTACCCCACCCGCccccagcaaaaaaaaacaagtggtATCTCCCATTGTTCACTACATCTGCTCTACACACATGACCTACAGAGACAACCCAGCAGCGACAGCCAAACACAGAGCTGCATTAGGGGCCTGGAGGCCCGCCCCACGGCCATTCAGGGGCCAATAGCTTGAGGGGAAGACCGCCCCTTGTCCCGAATGGGCCCCCgatcacagacagacacaaaccaGCAGCTTGGACAGCGTGAGTTTCTTTCTTCCCCAATCACAGAAACCATTTCAGTTCCTCCAAAAAGTAACACAAATCAGTGCAAGCCTGTGCATGGGACATGGAGTGCTCAGCGCCAAGTGTACGATTCATCCTCCCCTCTGTGGGACAGGACACGTCCCAAGCAGACAAAGAGGAGGAATGATCTAGAGTGGATAAGTACAGCTGGTACTGAAATGGTTtgaagcagaaaagaaaaactcacCCTTCACAGGATTATCTCAAGCGGCCGATTTTAAAGATTCGCTCCCGTTCTGCATATACAGGATTCCGCAGCCCTAACTTCCCAGGCCGACTCGCAAGGCGCCCCAGTGACATCAACCAGAACAGCACAGGTTCAGAATAAACCCTGGTCACTGCCTTTGTATTTGCTAGGCTGAAATAAAGTGCGCGAGTTTTTGCGAGTGAGTATAAACGTGCGAGTGCGCAtctgtgagtttgtgtgagAGAACGTATGCGAGTGTGAAGCATTCTCTCTCATATTGGACCAGGGTGTCCTCTAATGAGAGAAACCCCAAACACAGCTGAAGAATTGGATCTAAAACCGTCGATTAAACGCTCCAGCCCTTAACTGCGCCCACGCCGGCGCCACAGTGATGTCATCCACCAGCGCCAGCCAGGCAGCCGGGGAGTCTGGGAGATGTTGCCTGCGTGGGGCGAACGGGACGGACAGATCGGAGTGCGGAGGGGGATCCCCTTGggctcacagagagagagaggagctgcCCTCAAATGTCCAACAGCGCagttttcatattcatattagaCAACGCAATCACAAGTCAGCCTGGGCAGTTTTGTCCGCTGGGAGATGCTGGATTTTGCAGTGGCCTTGAAACAGAGAGCTGTGAAAGGGGGTCTGTAGTCAAATCAAACAAAGGCCTAAAATGATCGCGTATCCCGCAGAATTCTCCGCAACTAAAGTGAGGGGCGATCGGTCTCCAGCACAGACACCCCCTCGGATGCATCTAGGCAGTTTGTCCTCGTCAGACTCCATCATTATTTGCGTGGAAAGAGGCGGAATTCAGCCAGGCAAACATACTGAAGAGAAAGCTGCGTTTACACAGGATTCCCCTACACTCTTTCAGCACGGCCAGCGAGGTGGGCATCAGGGTCCCTGGGCAATGAGGCCTGGTGTGACAGAAGGACTTCAGAGCCTTCACAACGCCCAGGGAGCAGAGACACTCCCACATCAGGACTGCAGGGGACACAGACAGAATATATGGGCCTATTTTAGGCCTTTATTTTGACTACAGTTGTGATGCACCCTGGGGAGCTGGCGAAACCGGGCGCGTTTATAACATCCTGTCAAGAGTCTGCAGCAAGACAAATACAGCCCAGGGCAAAGCAGCTGGGCGGGTGGGAGACAGGGGAGCTGCTGTGACTGACCCCTGAGCTGCCCAGGGGGGACTGCAGCTggtctcccctcccctcctccgcCACCCTCTGTAAATAATATACCTGAAGTTACACAAATCCACATTCTACCGCACTATATTAGAATATCCGTTTCACCAGGGATTCAGCATGATTATTTTActtgtgtggactatagtatagtataggggccagactggagccagcactgtctaagactatagtatagtataggggcccagactgtgTCGTTTACTACAGGGATCCAGACTGTCCTTCATCTCAGAGCTCAGTTGGttggggggggatgggggtgggaCAAGGGCATCTGTGTAGCACCTACTGGTTCGCAGAGGAGGACTGCGGACACAAAGCCTTACTACAGTTATTAACATCACTACTACTGAGAACAGCTTAAAAACATCAGAACAAAACTTGGAAACCTGAGAAGAGTaatgggagagggaggggtgggCTGGTGATAAGGGGGAGGGACCAGGGTGGGCAGTCCAGTCCAATGGGGAGACAGCACTTGACCATGGGGTGTGGTTTAATGGGGTGTGGTTAAATAGTGCAGTTCTCTAGGGGTGTAGTTTGTGGACTGTTGACCTATAGGGAGAGGGGGTGTGGTCTGGGAGGGCTGTGGTCCTATAGGGAGACCGGGATTGGACAGTGGGGCCTCCATTCCCGCCCCCTGCCCCAGTCTACAGTGCTTTATTAGACAAGTTACCTCGTTAGCGAGTCAGGCGAAATAATTAAGCAACCACTATGTACCGGGGCCCTAAATATCGAACAACAGCAACGGCAACAACCACAAATAAATCATCagcatcatcgtcatcatcatcatcatcatcatcatcacaaaataaaacctacaaCAAAACAGTAAGAAAACGACCAGGCTTCGGACACCGAGCGGCAGCATCCTGGGTTTGTTCTTAAtcttcttgtttcttttcccGTATCTTTTACCTTCCTTCCGTCCGTCCGTCCTTCTTTTAATCGTTTCTCAAGTTTATCAGCAGCATAAGCGAGTCTAGATTCCCTCtttccccttcctcctcctcctctcctctcctctctccagaGGTTTTGCGTCGTTCACTCGGCACAGGTTTCAGTGTCTGAATGTTaagttttccttctcttcccaTCCATagtccacctctctctctctctctctctctctctctctctctctctctctctcactcacagtGTGCTGTCCCCAATTGTGAGTTTATAATGGAGGGATCCCCcattctcactctctctctctcctctccctccctctatctcttctcccccctccctaactctgtccttctctcttttccctccccctctctcctctgcctccgtttctctctccctctctctcttactatcctagtgtgtgtatgtgtgttatcaCTTATCACAACCACACACAGTAAGACAGacgacagagacagagagagagagagagagagagaggggttaatacagtacagaagcactgactgactggacaccgCAGCACACCGAGAGAGGAGATAGCATGGGGCAATAGCACAGCATGACACGAACGACATTGatattaataaagaaactaCAAAAGGCCAGGATACAGTGGGGCCAAGTGGATGGGGCGATGGCGACTACGTTACTTATGGAAACCATCCGGAagggaaacaggaagtgagGGTGTCACATTACAGGGCGGTGTATTTGGCACTGAAGTGATGGCTGATGGGTACAGCAATACTGATAGAAGCCTCGGTAGgcaatcaaaatatttacattcaatGAATTGagtgtctatctgtctgtctcttcctATGGGTCTgactgtctgtctatctgtcgctccctctgcccctctctctgtcccactctctccatccctcccctctGTCTACctctcttccttttcttctctccctctcctcgcTCACcacccctctccttctctctcttccccctctccctgtctctctctctaaggCACCACTATCCTGAAGACGGACATCTGAACACAGCACTATAGtctacacactgactgactgactgatagacacactgacacacccagagacacacagtgacccagacagacacacagacacgggagcgacagagagatagacagacagacagacagacagacagacagagagactcagagagacagtgagacagacacagagtgagagacacgcagacagacacacagaaagaaagacaagcCAAAcagagactgacagacacaggtgtggagagagagaaagagagagagggatgggttAATGGAGCGATGGAGGGTGGAAAGTAGTTGTCAAGAAAGGAGAAAGAAGGcattccctttctctctctctctctctctctctcactctcagctCCTTTCTCTCAGATTGAGACTTCGTACTCCCGTGTGTCCTGGGGAAGACAGATAGAAGACAACCGacaattagagagagagagagaaagagagagacagagagaaaatgagtgagggaggagagagacaaaATGTTGAACAGACAATTACAAAGAGAGAAtgagtgacagagagacagaaaaggaaTAAGGCAATAAGGcaaacagaaagacacacacagacagacggagagactgggagagagacagacagacatacacacacacacacacacacacacacacagacaggcaggcaggcagtctTACCCCAGCCTCGTACAGTGGGTTGTTGAAGTCAGACTCCACTGTGATGGGGCTGTAGGAgtgggtgtgagagagagacaggccgAACAGAGACTTCCACTGCAGCCTGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170353 True 4829 lncRNA 0.50 2 14570375 14610737

Neighbor

gene id symbol gene type direction distance location
AMCG00012279 NA coding upstream 183 14567367 ~ 14570192 (+)
AMCG00012275 NA coding upstream 118146 14445064 ~ 14452229 (+)
AMCG00012278 NA coding upstream 127281 14438708 ~ 14443094 (+)
AMCG00012277 NA coding upstream 135489 14427959 ~ 14434886 (+)
AMCG00012274 NA coding upstream 146735 14416007 ~ 14423640 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding downstream 13782 14624519 ~ 14627965 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding downstream 27233 14637970 ~ 14638967 (+)
AMCG00012293 NA coding downstream 42702 14653439 ~ 14655115 (+)
AMCG00012298 NA coding downstream 303847 14914584 ~ 14915573 (+)
AMCG00012305 NA coding downstream 785615 15396352 ~ 15397381 (+)
G135582 NA non-coding upstream 31511 14535524 ~ 14538864 (+)
G135575 NA non-coding upstream 48770 14518216 ~ 14521605 (+)
G135542 NA non-coding upstream 196430 14373040 ~ 14373945 (+)
G135540 NA non-coding upstream 202038 14368049 ~ 14368337 (+)
G135506 NA non-coding upstream 338112 14226990 ~ 14232263 (+)
G135625 NA non-coding downstream 53015 14663752 ~ 14707073 (+)
G135634 NA non-coding downstream 65115 14675852 ~ 14677500 (+)
G135656 NA non-coding downstream 193743 14804480 ~ 14804953 (+)
G135657 NA non-coding downstream 201001 14811738 ~ 14818725 (+)
G135721 NA non-coding downstream 741148 15351885 ~ 15357725 (+)
G135566 NA other upstream 134647 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 180690 14388038 ~ 14389685 (+)
G135544 NA other upstream 191680 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 192724 14375633 ~ 14377651 (+)
AMCG00012268 NA other upstream 273716 14246763 ~ 14296659 (+)
AMCG00012294 NA other downstream 99507 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 353307 14964044 ~ 15245994 (+)
G135649 NA other downstream 377561 14988298 ~ 15009803 (+)
G135670 NA other downstream 508988 15119725 ~ 15623881 (+)
AMCG00012309 NA other downstream 555807 15166544 ~ 15808521 (+)

Expression


Co-expression Network