G135634


Basic Information

Item Value
gene id G135634
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14675852 ~ 14677500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170405
CTGTACCCAGCCATTCCCCACTGTACCTGGCCTTCTTCTCTCTGTAGTCGTACACTTGCACAGCAGCGTTGTGTGGTACCCTGTAGGAGACAACGCGGGTGCGGTCCCTGGGCTCCTCGGGTCCCTGGCGTTCGTGCCCTCTCCGCTCCGAGCGGTCAGCCAGGGGGTCTTGGGCGGCGGCCAGCAGGCTCTCCACGTTGGGTGGCAGATCCTTCTCCCACAGCTCCTCGTCCTGGGTCAGCATGTAGGTGTGCCCGATCATGGCACaccttcCCACTCTTGATGTCTCGGATGTAGATCCCCTCGTTCTCGTCCAGCGGTATGGCCTGTCGCTGTAGCAACACCTCCACCCCCACCGGTGGCACGTATTCCAGCGGCCCACGCAGCATCCAGCGGTCCCCGGGGCGACGGAgcacccccctctccccttcctctccctcctccgcTTCCCGCTCCGTCTCCTgctgtgagtgagagagagagagagagagggcgagtTAATACAGTGCAGACTTACTGACCggacactgacactgcactgagagagaggggcatATGATGCCTGCTTTAAAAGCATtgagttgagagagagagagagagagagatgacacAGAAGTCAAATTCCTGCTCTATGCGGATGGCCTAGTCCTGCTGTcgcccacagagcaggggcttCAGCAAAACCTGGCACTGctagagcagtactgtcagtcctgggccctggcagtaaacatgaagaagacaaagatcatgatcttccaaaaaaatactgttttattaggttaagtattttacaatcaaaataaaaacaaacaaaacaaattttaatacttccAAAAAAAGGCCAGACCTCAGGGAAACAAATACCACTTCACGCTAGGCAACACTACCCTAGAACACACCTCACACTACACTTACCTGGGCCTGACTATTAGTGCGTCAGGGGGTTTTAACCTGGCAGTGAAGGCACTCAAAGACAAAGCAAGAAGAGCTTTCTACGCAATCAGAAGAAGATTctataacattaatattccaGTCAAAATCTGGCTCAAACTAATTGACAGTGTGATCCAGCCCATTGCGCTGTACGGTAGTGAAGTATGGGGTCCACTCAGTCAACAGGACTACACTAGGTGGGACAGACATCCAATAGAGACCCTGCATGCTGAACTCTATAGAAACAtactgcaggtgcacaggaacacACCAAACCACGCATGCAGGGCAGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170405 True 1232 lncRNA 0.53 2 14675852 14677500

Neighbor

gene id symbol gene type direction distance location
AMCG00012293 NA coding upstream 20737 14653439 ~ 14655115 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding upstream 36885 14637970 ~ 14638967 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding upstream 47887 14624519 ~ 14627965 (+)
AMCG00012279 NA coding upstream 105660 14567367 ~ 14570192 (+)
AMCG00012275 NA coding upstream 223623 14445064 ~ 14452229 (+)
AMCG00012298 NA coding downstream 237084 14914584 ~ 14915573 (+)
AMCG00012305 NA coding downstream 718852 15396352 ~ 15397381 (+)
AMCG00012303 NA coding downstream 721933 15399433 ~ 15400438 (+)
AMCG00012306 NA coding downstream 752788 15430288 ~ 15430887 (+)
AMCG00012307 NA coding downstream 846012 15523512 ~ 15530379 (+)
G135595 NA non-coding upstream 65115 14570375 ~ 14610737 (+)
G135606 NA non-coding upstream 74269 14597130 ~ 14601583 (+)
G135594 NA non-coding upstream 98854 14563576 ~ 14576998 (+)
G135582 NA non-coding upstream 136988 14535524 ~ 14538864 (+)
G135575 NA non-coding upstream 154247 14518216 ~ 14521605 (+)
G135656 NA non-coding downstream 126980 14804480 ~ 14804953 (+)
G135657 NA non-coding downstream 134238 14811738 ~ 14818725 (+)
G135721 NA non-coding downstream 674385 15351885 ~ 15357725 (+)
G135666 NA non-coding downstream 1124929 15802429 ~ 15806653 (+)
G135768 NA non-coding downstream 1134413 15811913 ~ 15812121 (+)
G135573 NA other upstream 90082 14584124 ~ 14585770 (+)
G135566 NA other upstream 240124 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 286167 14388038 ~ 14389685 (+)
G135544 NA other upstream 297157 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 298201 14375633 ~ 14377651 (+)
AMCG00012294 NA other downstream 32744 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 286544 14964044 ~ 15245994 (+)
G135649 NA other downstream 310798 14988298 ~ 15009803 (+)
G135670 NA other downstream 442225 15119725 ~ 15623881 (+)
AMCG00012309 NA other downstream 489044 15166544 ~ 15808521 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G146229 NA non-coding NC_035912.1 CM008315.1 33707655 ~ 33709779 (-)