G135666


Basic Information

Item Value
gene id G135666
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15802429 ~ 15806653 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170447
GCATGACACAGGGCTTTAAACTTTAAGGGAAACTCCGGCATCCTGAACCCCACCCCACCACTTCCCCTCTTAGAGTTTGACATTATTTCCTGGAACCAGTGGAGTGTGAGTTGGCAGCCCAGCCAGTGTGTTCTTGAGCAACAAAAACTTTATCTTTATATCACAGATCAACTTAGTCTGACAGCAACAACCCATAACCGATATGAAGACGGACTTTTCTGTTATAAATCGTGACAATCTGGAAATTACATCGTTCAACTTCCAACCTCTATCGAATAGGCAACCACCTGATCCAGGGATATCCCTGAAAACAAAAGGCACCGGAAAAAActatttcttcttttcattatGGAAAACGCAGAAAACAATCCAAATTTCATCAGTTGAGAAGACAAACCAAGGAACTCAGAAGAGCAGTGATGGGAGAGTGTCTTGGTGCAAGAGGATCTCACTGctccttgtctgtgtgtggatccTCACTCTCATCTCTGGNNN

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU170447 True 495 lncRNA 0.43 3 15802429 15806653

Neighbor

gene id symbol gene type direction distance location
AMCG00012307 NA coding upstream 272050 15523512 ~ 15530379 (+)
AMCG00012306 NA coding upstream 371542 15430288 ~ 15430887 (+)
AMCG00012303 NA coding upstream 401991 15399433 ~ 15400438 (+)
AMCG00012305 NA coding upstream 405048 15396352 ~ 15397381 (+)
AMCG00012298 NA coding upstream 886856 14914584 ~ 14915573 (+)
AMCG00012313 NA coding downstream 82045 15888698 ~ 15896509 (+)
AMCG00012316 NA coding downstream 134979 15941632 ~ 15984389 (+)
AMCG00012317 NA coding downstream 180406 15987059 ~ 16057103 (+)
AMCG00012321 NA coding downstream 251200 16057853 ~ 16100861 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding downstream 335997 16142650 ~ 16155119 (+)
G135721 NA non-coding upstream 444704 15351885 ~ 15357725 (+)
G135657 NA non-coding upstream 983704 14811738 ~ 14818725 (+)
G135656 NA non-coding upstream 997476 14804480 ~ 14804953 (+)
G135625 NA non-coding upstream 1095356 14663752 ~ 14707073 (+)
G135634 NA non-coding upstream 1124929 14675852 ~ 14677500 (+)
G135768 NA non-coding downstream 5260 15811913 ~ 15812121 (+)
G135779 NA non-coding downstream 72481 15879134 ~ 15900621 (+)
G136025 NA non-coding downstream 296241 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 365086 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 387322 16193975 ~ 16196114 (+)
AMCG00012308 NA other upstream 113091 15684478 ~ 15689338 (+)
G135670 NA other upstream 178548 15119725 ~ 15623881 (+)
G135744 NA other upstream 238593 15559904 ~ 15563836 (+)
AMCG00012302 NA other upstream 322880 15452069 ~ 15479549 (+)
AMCG00012300 NA other upstream 556435 14964044 ~ 15245994 (+)
G135781 NA other downstream 104595 15911248 ~ 15930848 (+)
AMCG00012324 NA other downstream 298252 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 369743 16176396 ~ 16183090 (+)
G136076 NA other downstream 443595 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 587046 16393699 ~ 16432813 (+)

Expression


Co-expression Network