G135744


Basic Information

Item Value
gene id G135744
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15559904 ~ 15563836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170550
AGAGATGCATACTCATGCTGGGTAGAGCTGCTGAACTTTGCCCTTcttttttaagataaaaaaaacacgGGTGCACTCGGAGCCCAGGCCATGTGTAGGGGGATAAGGATCTGTGGCTGTGCTGAGTGTCAGTGCAGTGAGAGGACAAGGGCAACACAGGAGATCAGGGAGTTTAGAGTTGGAGCTGTGACTCTCACCTGCAGCTCCCCCACCGAGACTCTCTGGTCTGCGCAGTCGGGACACTGCTGCGTCTCTGCTGTAGGTCTTCAGTGGAAATAACGAGACCTGGGAGCCTTATTGACCACAGTGTAGAGTCTGAAGAGCTGCTCTGCACAGGACTGAGTGAGATCCTTCAGTCCAGAGCACAAGCTGAGATGACATCAGTAATTGGTGAGACGCTGTTGATTTCCTCCTCGTCTCTCTCATTGCTTCTCTGCCAATCGCTGTGGAAATGGCTTCCCCCAGTATTCCCCTGTGTGAAGAGCAGTTCCAGTGCTCCATATGTCTGGATATATTCTCCAAACCAGTCTCCACTCCCTGTGGGCACAACTTCTGCATGGCGTGCATTGGAAGGTACTGGGACAGCAGTGATGTGTGTCAATGCCCAATGTGTAAGGAGACTTTCTCTAGGAGGCCTGACCTACGTGTTAACACCTTCATTGCTGGGATGGCTGAGCAGTTGAAGAAGGTAAGGCTCAGCCCTCCTGAGGAGCTCTCTGCTGAGCCTGGAGAAGTGCCCTGTGATTTCTGCACTGGGAGAAGGCTCAGGGCCGTGAAATCCTGCCTGGTGTGTCTGGCCTCTTACTGTATGACTCACATCCAGCCTCACTTTGGAGAAACTGCCTTCAGGAAACATAAACTGATTGACCCTGTGATCAATCTTGAAGACATGCTGTGCAGGAAGCATGAGAGAGTTCTGGAGCTGTTCTGTAGAGATgaccaaatatgtatttgtgagtTCTGCAGTGAGGCAGACCACAGGATACACAGCACTGTACCTTTAGAGGAAGAATGGAGAGAGAAGAAGGCTCAGCTGGGGGAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGACAGACTGAAGAAGGTGCAGGAGATCAAACAGGCAGTGGAGCTCAGCAGACTTGGTGCCCAGAGAGAGGCTGAAGACAGTGAGCAGGNN

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU170550 True 1162 TUCP 0.51 4 15559904 15563836

Neighbor

gene id symbol gene type direction distance location
AMCG00012307 NA coding upstream 29525 15523512 ~ 15530379 (+)
AMCG00012306 NA coding upstream 129017 15430288 ~ 15430887 (+)
AMCG00012303 NA coding upstream 159466 15399433 ~ 15400438 (+)
AMCG00012305 NA coding upstream 162523 15396352 ~ 15397381 (+)
AMCG00012298 NA coding upstream 644331 14914584 ~ 14915573 (+)
AMCG00012310 NA coding downstream 200193 15764029 ~ 15815714 (+)
AMCG00012313 NA coding downstream 324862 15888698 ~ 15896509 (+)
AMCG00012316 NA coding downstream 377796 15941632 ~ 15984389 (+)
AMCG00012317 NA coding downstream 423223 15987059 ~ 16057103 (+)
AMCG00012321 NA coding downstream 494017 16057853 ~ 16100861 (+)
G135721 NA non-coding upstream 202179 15351885 ~ 15357725 (+)
G135657 NA non-coding upstream 741179 14811738 ~ 14818725 (+)
G135656 NA non-coding upstream 754951 14804480 ~ 14804953 (+)
G135625 NA non-coding upstream 852831 14663752 ~ 14707073 (+)
G135666 NA non-coding downstream 238593 15802429 ~ 15806653 (+)
G135768 NA non-coding downstream 248077 15811913 ~ 15812121 (+)
G135779 NA non-coding downstream 315298 15879134 ~ 15900621 (+)
G136025 NA non-coding downstream 539058 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 607903 16171739 ~ 16172095 (+)
AMCG00012302 NA other upstream 80355 15452069 ~ 15479549 (+)
AMCG00012300 NA other upstream 313910 14964044 ~ 15245994 (+)
G135649 NA other upstream 550101 14988298 ~ 15009803 (+)
AMCG00012294 NA other upstream 833121 14710244 ~ 14726783 (+)
G135573 NA other upstream 974134 14584124 ~ 14585770 (+)
AMCG00012308 NA other downstream 120642 15684478 ~ 15689338 (+)
G135781 NA other downstream 347412 15911248 ~ 15930848 (+)
AMCG00012324 NA other downstream 541069 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 612560 16176396 ~ 16183090 (+)
G136076 NA other downstream 686412 16250248 ~ 16259332 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G273100 NA unknown NW_019172193.1 APWO02001791.1 24903 ~ 25692 (+)