G136051


Basic Information

Item Value
gene id G136051
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16193975 ~ 16196114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170969
AAAtgggatatatttatttaattttccactGCACATCCCTTCATACATTTCACACAATTAACACTGCTCCCAATTGGTATTAAccataataaataaagctttaatGACAAATGACATATAATAATGCAGGtagagacatttatttttgtgtgatcttgaaataaatcatacagtatCGTTAGACAGATTTGCTGTTGTACACAACACATTAGCACTCCACATGCCTCCTTCAAATATGACAAAGTTAAGACTAAACCAAAGATCAACACCATTTTGGGAATAAAACTCAAGTCCAAAGCTACAACTTATGAAAGAGTTAAACAATGCTGTCCAGTCCACCCCCAGTGTGAGTCCTCTGGTGTCTCTTGAGGGTCCCTGACCGGATGAAGCTCTTCCCGCACTGGCTGCAGCCATACGGTTTCTCCCCCGAGTGGATGAGTTGGTGCGTCTTCAAGTAGCCCTGCAGGCTGAAcgtcttcccacactgggtgcagcagAACGGCTTCTCCCCACTGTGGACACGCTGGTGCGAGCGCAGGCTGCCGGCGTAACGGAAACGCTTCCCGCACTGGAGACAACGGAAAGGCCTCTCCCCAGTGTGCACCCGCTGGTGCGTTGCGAGGCTGGCAGACCGCTTGAACGTCTTCCCGCACTGGCTGCAGCTGTACGGGGTCTCTCCGGTGTGGACCCTCTGGTGCCTCTTGAGGTTGTTGGCCGTACGGAAGCGCTTCTCACACTGGACGCAGCCGTGCGGTCTCTCCCCTGTGTGGATCAGCTTGTGCAGCTTGAGCCGCCGGGAGAGGTTGAAGGTCTTGCCACAGAGGGAGCACAGGTAGGGCCTCTCGCCCGAGTGCACGCGCTGGTGGATCTTGAGGCTGCAGGCGGCCGTGAAGCTCCTCTCGCACTGGGTGCAGCGGAACGGCTTCTCCCCCGTGTGGACGCGCTCGTGCGACTTGAGCTGCCCCAGTTGGCGGAAGCTGCGGCCGCACCAGGGGCAGCCGTAGGGCCTCTCCCCCGTGTGGATGCGCTGGTGGGATTTGAGAGTGCAGGCGGCGGTGAAGCGCTTCCCGCACTGGCCGCAGCAGTATGGCCTCTCCCCCGAGTGGATGCGCTGGTGGATTTTGAGGCTGCAAGAGGTGGGGAAGGCCTTGCCGCACTGGGCGCAGTGATGCGGTCTCTCTCCTGAGTGGACCAGCTGGTGCAGGTGGAGCTTGGTGGGATGGTTGAAGCTGTTCCCACACTGGCCGCAGCTGTATGGCCGCTCGCCGGTGTGAGACAGCTGGTGGATTTTAAGGTTGTACGCTGTACTGTAGGTCCTCCGGCACTGGGCGCAGCGATGGCAGGGCTGGGTGTCTGTAGGGGAGTCAATGGCTGTATTGGGATTTCCAGGCAAAGATGAGGGCGTGGGGGAGGTGGAAGGTCCTGGGAATGGCTGTGGGCACTGTGATGATAGACCCTCATCCTCCACTCCAAACTCAGCGCTGTGGAAAGATTGGAGGTCCATGTGTTGCTCCAACTTCACACAGTCCAGTCCATCAATCTCTTTCTTAATTCTGACAGATTGCAGGCTGGGATCCCCCAGCTCTGCGCTGTGGCCATAATGCAGACTGCTGTGCTCTACCTTTATGTCATCCTCATCATCATGCTCTTCTTTAATCTGAACGGTCACAATAAGAGGTCCATCGTCTTTAATGGAGCCTGGCTGTGCACTACACAAGGACTGACAAGGTTCTGATTTAATGTAGTCCAGTGCATCAGCCTCAGTTTTAGTGCGTTCAGACCCCAGACTGGATTGAGGGCCCAGTTCAGAAGTGCTGAGAGGTTGTGTCTCCGCAGTGTGGGTGGAATCTAAACCAGGGCTGCTACTCACTTCTGATCCCAACATATCAAATCCTTGCATGACAAACTAAGATCCTAGTTGGCGTTCTGTTGTTACACACCCCGGCTCTGACATGCAACACGACACCAGTCCACTGAACTCCTCTAACTTCTGTCCAGTCCAGTACTAATGTTATGTGTCTTCAGTACctgtgggctctgtgtcctgcctcagactggagctCCACTCCTGctcacagtgctgctgctcaatgggagccctttccccagagtcagggagagcgctggcttctacagctcc

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU170969 True 2140 lncRNA 0.54 1 16193975 16196114

Neighbor

gene id symbol gene type direction distance location
AMCG00012319 NA coding upstream 24259 16164268 ~ 16169716 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding upstream 38856 16142650 ~ 16155119 (+)
AMCG00012321 NA coding upstream 93114 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 136872 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 209586 15941632 ~ 15984389 (+)
AMCG00012325 NA coding downstream 2889 16199003 ~ 16210644 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 16799 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 91763 16287877 ~ 16288823 (+)
AMCG00012330 NA coding downstream 96157 16292271 ~ 16300821 (+)
AMCG00012332 NA coding downstream 111295 16307409 ~ 16316260 (+)
G136040 NA non-coding upstream 21880 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 90671 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 293354 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 381854 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 387322 15802429 ~ 15806653 (+)
G136177 NA non-coding downstream 341948 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 369785 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 424141 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 632936 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 646453 16842567 ~ 16907105 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 10885 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 51334 16104905 ~ 16142641 (+)
G135781 NA other upstream 263127 15911248 ~ 15930848 (+)
AMCG00012308 NA other upstream 504637 15684478 ~ 15689338 (+)
G135744 NA other upstream 630139 15559904 ~ 15563836 (+)
G136076 NA other downstream 54134 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 197585 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 364535 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 478165 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 537312 16733426 ~ 16765108 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110531377 LOC106578102 misc NC_048573.1 CM023227.2 8277882 ~ 8283359 (-)