G136177


Basic Information

Item Value
gene id G136177
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16538062 ~ 16539149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171136
taaaaatattctattacagggaaaataatattttcaaatacaaataccgtaatttctgtaattgacccagatCTGCACAAACCTACAATGCGATGATCGTACGGTGGGATGGATATAACCTGCCACCTCCACGGGTCCATTCTTCGTACGTGGACAAGTGGGTTAGCCGGATAAATTTCAGGATAACCTGGCATAAACTCGGGATTTTCCGACTCCGAAGCGAGCTTAAAGATCAGCCAGCTATAGCAACATGTCCAGCATCCTAACCCTGCTCCCTGGCAGGTTCACTGGAAGTTAGCCAGCTAATTAGAGTCTGAATAGTTTCCCTTCCCCTCCATATATTGCACCAGAGGGATCAGCCTGTGAATAGAAAGAAATCAGATCCAGTATGTTTCAAATCTTGATATTCAAATGCAGGAATGATAACTAAATATCCTGGTTCACACTCACAGCCAGCTTCTCATCCAATCActccttttccttctccacCCTCCTCATCTTTAAGGAACTGTAATTCAAATAGTCTGTAAGCAAGATCAAACATAGAACATATTCCAACAGCCTAGAAATAATATAGGCTAAATAgctaaattatgaatatatatttctatgtggTATACTGTTGGCCAGCACAGAGCTCTATGTAATATCTGCATGGGAAAAAAGtctgggaaaaaatatattgaacacCACAGTGTTTTAGGATCATTAACATcgatgcaattaaaaaacaataaactaaagcatttaaattaaagatgtgtttttacTGATTAAGGAAACTCCACACTGGAGTGCACCACTAAGGCCTATTCATTACTATTAAGTCAAGCTTAATTCAATCAGGGGGTGATGAGTGattaccaaataaaataaatacatgaaacagCAGTGAGTAACGgtgtgtgttagctgggctgGCTTTTGCAGATGCAGCAGTGTTAtctttattcaatataatgttcTTCGCCTCCTCATACTCATGCTGAAACAGGCAGCAGCTCTTTGCCAAATCATGGACTCGACGCCACTGAGCGTCCTTTCTATCCAAACAGGATGCGCATTTATCCGTGATGAGCAAAGTCTGC

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171136 True 1088 lncRNA 0.40 1 16538062 16539149

Neighbor

gene id symbol gene type direction distance location
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 817 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 20441 16513859 ~ 16517621 (+)
AMCG00012336 NA coding upstream 135865 16400490 ~ 16402197 (+)
AMCG00012337 NA coding upstream 159075 16367429 ~ 16378987 (+)
AMCG00012341 NA coding upstream 173166 16364511 ~ 16364896 (+)
AMCG00012347 NA coding downstream 111184 16650333 ~ 16670699 (+)
AMCG00012350 NA coding downstream 174197 16713346 ~ 16715975 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding downstream 273636 16812785 ~ 16818439 (+)
AMCG00012360 NA coding downstream 338228 16877377 ~ 16900435 (+)
AMCG00012366 NA coding downstream 438423 16977572 ~ 16984994 (+)
G136051 NA non-coding upstream 341948 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 365967 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 434758 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 637441 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 725941 15811913 ~ 15812121 (+)
G136191 NA non-coding downstream 26750 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 81106 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 289901 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 303418 16842567 ~ 16907105 (+)
G136286 NA non-coding downstream 373086 16912235 ~ 16914695 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 105249 16393699 ~ 16432813 (+)
G136076 NA other upstream 278730 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 354972 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 395421 16104905 ~ 16142641 (+)
G135781 NA other upstream 607214 15911248 ~ 15930848 (+)
AMCG00012348 NA other downstream 21500 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 135130 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 194277 16733426 ~ 16765108 (+)
G136245 NA other downstream 272557 16811706 ~ 16863593 (+)
G136255 NA other downstream 327388 16866537 ~ 16867448 (+)

Expression


Co-expression Network