G136236


Basic Information

Item Value
gene id G136236
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16829050 ~ 16831802 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171209
CTTTTATttgatatgtacacattttaaaccaaatataCAGATACGCAtcacaatactttaaaaacCATTCCTTCATCCTACAGCGAGGGGGGGAAATTCGTCCTTGTTGGGGGTCGAGTAATCCGACAGACACTCCTACACAAGCGTGTCCTCAATAGGGTACAAGTAGCTCAGGGCTCCCTTGACAGATGGGCTAAGACAGTGgttcaattaagtaattgagagctcagctggaacaaaacccagcaggataccagggttgggaaccactggcctAAGAGGACACCGTACAATCCTTCCCAAACCCTTTCAAGTAAGGAACAAAGGAAGTGACAAAGTAACTGCCaggagggggggaagggggagatGTGCAATGATCAGTAAATCAAGATGTTTCAATCAATTAAATACGCCATTAACTTCTACTGCTAGAGCCCAGaacccacccaccccctcctGACATCAGGCAAACGGTCCTGAAGGTTTTTGGTTCAAACGCAACAAAGCCTTGCGTTTCCTCTAGTCGGATACAAACGAAATTTGTAACGATACCGATCCTACACCCACGTATTCAGGATAAAAAAAcgaactaacaaaaaaaaaaaaaaaacaccggAACACAAAAAAAACGATCAAAATTAGCAAGGCAAGGATGTTCCGAGCGAGAGGAGGAGCAGGTAGAAAAACTAACGACTGAAGTTAACCCAGCATGTGACCCGTCTGGAAACAAATCGGCCACAAATCCCAGCGCTCCGAAACGAGGCCGCGGTGTTCAGCAGAGAGGCCGGGACAAACTCCCGCTCCGATCGAGAGAGACGTTCACTGCACTGACGCCGGGCCCAAGGTGTCAAGCACATTTCGGTAACCGTTTAGTGTCTTGCCAAACAGTCCTTCAGCGGAAGCACTTTAAAGTCACGTGATGGGAGAGGGGCGCGCGTCAGGTgagcagaacacacacacacaccactcgGCTCTCGCCCTGCTTGGGTTCATTCGCTCACCATCCCCCATTGGTTTCGGAAGTGATGTCAGTTTTCACGGCAGCTTTTCACACAACACTGAACGAACATTCGAATTGCCTTCAATAGAACGGGCGAGGAAACGCAAAAAGGGCTCTCTCTATAGgatgatttaaaacattatccCCCCCCACAACAAACCCTATCCCACCCcctcttgttatttttttcaagttTGACATCAAGGCAGGACGATGTGAAAGGCAAAGACTGAACTGCATGCGTATCCGAATGGAGTCTGTGACTAAAGAGAAAAACCCAAATTCCCAAAGCCCTGAACAGTTTTACAGCTGCGCCtcaaaaacaatttataaagaCTTGCGGAGACTCCGAACTGTGACCCGCCGAGTGGCTAGTGTTTCAAAAGATCCAATCGTCTCGAGGTTTGGATCAGACCCCCTCCGTGGAGAGGCAGGGTTCCCCCGACCTGAGCCGCTGCCTAAACTTGCTTCATGGATCCAGAAAAGGGTTCCCCGATCTTTAGAAACATGGGATTAAGAGAGAGCTGTACGGTCGAGCATCTGGGCACACAAGGGTTTAGAGTTATCGTGGTTGAGACGGGGGAGGGTGGGAAGACTACACTGCCTCCGTCGTTGGGCCACCTCGAGGGTTCGGCTCCTCCAACCCGGGTGGTCCTGGAGATCCCAAAAGGGTCTTCAGTGCCAACCCGAGTCCAAACTACCCGATTACAAAAAACAGCCTCCTGTCCTCCTCGCCGTCTCGACTGAGCCGGCGTCTCGCCCCTCCCAGTGCTGAGCGAAGAAGAAAGCCATCTGGGGAACTGTTCTAGACTGAGGGACCCCTGACCTCCAAGAGTAGAGGAAGGGAGGTGACCAGATCGAAGGACCAGGAAGCGGCCAACGGGGAGTGAACCCAGCGGTCCTCATTAGTGTTGAGAGAAGGCAAGTCATCTTAAATATAGATAGGAGTACAGCGAGCAGGAACTACACAAGTTAGACTCGTTAACAGTCCGACTAAAAGGAGGGCCACTCTCCATGGGGGGCGAGATTTCGTTTCATTTCACGCcgtggtggtggggtgggggggaaacgCTCAACCACTGATTGACTCGCTGGCTCTGGGGCTCAGGGAGGGCTGGTTTGGCGAAGCGTGCAGAACTAACTGCAAGACGCTGGAAAAGCCacctaaactaaactaaaaacacGCTTCACAAACTCTGACCAGTCTGTGATGTCCCCCCCTCCCAGCGACTCTACGGGTCTTGATTCATTCCCCCTGCTCCTTggtctgtgcctttccacacccccttccccctccccacaaaataaaaataataataatataataataataataatatccctccctctccacccccctgcGCCCAGCGGCTCAGTTGTTCTGGCAGCAGCTCTGTTTGGGCGCGTGCTGCGTGGGCTGCACGGTGATGGGCACCACGTTGGAGTTGGGTGAGAAGTCTGAGTCGCTGCGGCCGGACATCTGGCGCTGGGACACGATGCGGTAGATCtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171209 True 2512 lncRNA 0.51 3 16829050 16831802

Neighbor

gene id symbol gene type direction distance location
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding upstream 10611 16812785 ~ 16818439 (+)
AMCG00012350 NA coding upstream 113075 16713346 ~ 16715975 (+)
AMCG00012347 NA coding upstream 158351 16650333 ~ 16670699 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 291805 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 311429 16513859 ~ 16517621 (+)
AMCG00012360 NA coding downstream 45575 16877377 ~ 16900435 (+)
AMCG00012366 NA coding downstream 145770 16977572 ~ 16984994 (+)
AMCG00012369 NA coding downstream 161677 16993479 ~ 16997064 (+)
AMCG00012367 NA coding downstream 190857 17022659 ~ 17029088 (+)
AMCG00012370 NA coding downstream 210393 17042195 ~ 17051046 (+)
G136195 NA non-coding upstream 196786 16620255 ~ 16632264 (+)
G136191 NA non-coding upstream 262819 16565899 ~ 16566231 (+)
G136177 NA non-coding upstream 289901 16538062 ~ 16539149 (+)
G136051 NA non-coding upstream 632936 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 656955 16171739 ~ 16172095 (+)
G136237 NA non-coding downstream 10765 16842567 ~ 16907105 (+)
G136286 NA non-coding downstream 80433 16912235 ~ 16914695 (+)
G136297 NA non-coding downstream 124887 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 125656 16957458 ~ 16978213 (+)
G136351 NA non-coding downstream 333174 17164976 ~ 17172106 (+)
AMCG00012351 NA other upstream 63942 16733426 ~ 16765108 (+)
AMCG00012349 LOC106588560,LOC106570198 other upstream 122857 16674279 ~ 16706193 (+)
AMCG00012348 NA other upstream 180488 16560649 ~ 16648562 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 396237 16393699 ~ 16432813 (+)
G136076 NA other upstream 569718 16250248 ~ 16259332 (+)
G136255 NA other downstream 34735 16866537 ~ 16867448 (+)
G136258 NA other downstream 40036 16871838 ~ 16875600 (+)
G136296 NA other downstream 131528 16963330 ~ 17000089 (+)
AMCG00012374 NA other downstream 294211 17126013 ~ 17129339 (+)
G136341 NA other downstream 295353 17127155 ~ 17264404 (+)

Expression


Co-expression Network