G136286


Basic Information

Item Value
gene id G136286
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16912235 ~ 16914695 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171268
gcacttttcaattttttattgtacattataaaaacaaatctccatATTATGCAAGTCATAACATTTTtgctccccagcgatgtggctgaagctgacaatctgggaacatttaaaaatagactggataggatccttggatcactcagttattaatggacaccaaacgggcacaatgggtcgaatggcctcctctcgattggacactttcttatgttcttatgttcttattgtaGCAGTGGGGGAAAATTACCATACGTTGTCTTTGGCATTAAAGTATTGCTTATGTACAGAACCTTGCCTGGCCACCTCTTCCGACCTCTCCAACCTACTGGGGTCCTCCTGCAAACTGGCATAAGAGCAAAGCTAATCAGTATTTAACATGTCTTGGCAAAAGACAGCAGTCACTGTAAATAGATCATTagatccagagagagagagactcctgTCATTCATATGCTGCCCCAGCTTTAGATACAAACACAGAGCAACCTCTTTGTGTAGGGTTTTGTTTCTTCAGTTATTCATATGCTGCCGTTAGCAAGCGGCATTAAAGGGGCACTCGATCACTACAACAGATTGCGGTGTTGAAGGGGTTAAACGGCAGGCACGAGTAATGCAGACACAGGTGGTCAATGCTTGGgagcatacataaataaagctgAATTTCCAGATTGTTTAATTGAACCATTATACtttgtttattgttaaaaaaagaggatacattttagtattttttattaagttgtattattttcagtcttattgtttttagtatttttttaatgatattatATACCCATCACCTCAGTCTGTGCCGGACGCTAGCCGGTACGTATCTGCACCCCATTACGAAAACCTGCACAGGGTGGATAATCAGAGGCTATTATACCTTCCTTAGCCCTAACTGGAGCGCAATATGAAATTCTTCTACCATGAAAGAGTTAATGACTGAACCAAGCCCtccaaagaaaaaactaaatctgctTAAGGTCTAACTGGGATCAGGGCAAACCTATCGGACAATGGTATTGGATAACGAGACCTGGCAGTGAACTGGAGTTGGGTTCAGTGCTCTCCTAGGAGTTTTACGGGAGTTCTGTCAGTTTTACATAAATAGAATGAATGaaagacagacaaaacaaaccgCAAACCATACAATTAGCAGAGAATGGAGTGGTCCAAACATTGGAGTTGCATTCAGAGCCAACATCAAAGCTGCCCAGCCCTTACCACAttaaagagagggggggagagtcTTGGAGGTCGAGCTGGTATTGAAACGCATGCAGGGCATTCAGGAAATGTGGTGGGAGGGGGCACTGGGGTGTAAAGATGTCTCACAACAAGTAAGGAATTCTCAAAGTCTTCCGAAACATCTATTCCGCTTTCACAATTGCATTCCCAAATCCCCAGAAATACCGCACCGATTCACTTCACGACAGGAATGTGTTCAGGACAGTCCGATAAGACACTCacatgccccccctcccccccgtcCCAGAGTATAAACTGTGTTGAGCCAAGGCGGTTTCAAACACTGACAATTGCTTTTATTTGCTTGATCTTTtccaaataattcaaatgaacCGCCTCGTAAAATCTGGTTCagtgcaaaaaacaaatcacacaaaaaacGGACTTCCCAGCAAATAGATTCATCTCCGGTCTTACAGGATACAGGTTGGTGCCGACACGTGTGCAAGAACACATAACATACGAATACCAGGGCCTCtctttttaattcagatttacGGCAAAGAGGTGAAAGTGGGGGCAACAGCCGGCACCCGAGGAATGCTTAAAGCACTACACAGATCACACGGTCACCTAAAGGGAGTCCAAACTGTTTCCTGCTGGCTGCAGTTTTTTAACTGGACCCGGTaagccagggatgagaaggctTTTGTACAAGTGCAATCCCAGAATTCCCCCTCGACCGCAAGAATATCCGTGAGGAAATAGGGCGATAGGGCGGGCAGTAAAAACTGATCAGGCGAAGTCGAGCTTGACGGTGCAATCTGTGAGGGAGATCTAATGCAAACATGAGAGTTATAGCCCTGTGTGGGTGGGGGTGCCGAGGTCGTTATGAAAAGCCCATAGCAGGCTGGCCCCGATGACTGGGAATAGAATTCGGGTGGAAGTGCTGTGGTCGTGGAAAGAAAAGCTTACAGAAATAGGAAGGGGAGGTATTCTATCCCACCAGGCTGGAACAATGCCCTAGTGTCTCTCGCAACAAGTGAAAATTGGATCCGATGCCTGCGGCTGAATCAGAGCGCTGACTCGCTGGAGAGCGAACACCCCCCCTGGCTCAGAACGAGTTTTGGGGGGTAGTTTTAAAGAGGCCAAAAGGGTTTCGATTTCAGCTCTGTACTTTTCAGTACTGTAGCCCCCGAGCTTCGTTTGCAGGGTGTGACCTCAAGAGAAAAGACTTACTCAAGCCTCACAAAGAAACaggtgcccc

Function

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 6-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171268 True 2461 lncRNA 0.45 1 16912235 16914695

Neighbor

gene id symbol gene type direction distance location
AMCG00012360 NA coding upstream 11800 16877377 ~ 16900435 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding upstream 93796 16812785 ~ 16818439 (+)
AMCG00012350 NA coding upstream 196260 16713346 ~ 16715975 (+)
AMCG00012347 NA coding upstream 241536 16650333 ~ 16670699 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 374990 16530753 ~ 16537245 (+)
AMCG00012366 NA coding downstream 62877 16977572 ~ 16984994 (+)
AMCG00012369 NA coding downstream 78784 16993479 ~ 16997064 (+)
AMCG00012367 NA coding downstream 107964 17022659 ~ 17029088 (+)
AMCG00012370 NA coding downstream 127500 17042195 ~ 17051046 (+)
AMCG00012368 NA coding downstream 141835 17056530 ~ 17063053 (+)
G136237 NA non-coding upstream 5130 16842567 ~ 16907105 (+)
G136236 NA non-coding upstream 80433 16829050 ~ 16831802 (+)
G136195 NA non-coding upstream 279971 16620255 ~ 16632264 (+)
G136191 NA non-coding upstream 346004 16565899 ~ 16566231 (+)
G136177 NA non-coding upstream 373086 16538062 ~ 16539149 (+)
G136297 NA non-coding downstream 41994 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 42763 16957458 ~ 16978213 (+)
G136351 NA non-coding downstream 250281 17164976 ~ 17172106 (+)
G136436 NA non-coding downstream 375450 17290145 ~ 17290529 (+)
G136444 NA non-coding downstream 385832 17300527 ~ 17304999 (+)
G136258 NA other upstream 36635 16871838 ~ 16875600 (+)
G136255 NA other upstream 44787 16866537 ~ 16867448 (+)
G136245 NA other upstream 48642 16811706 ~ 16863593 (+)
AMCG00012351 NA other upstream 147127 16733426 ~ 16765108 (+)
AMCG00012349 LOC106588560,LOC106570198 other upstream 206042 16674279 ~ 16706193 (+)
G136296 NA other downstream 48635 16963330 ~ 17000089 (+)
AMCG00012374 NA other downstream 211318 17126013 ~ 17129339 (+)
G136341 NA other downstream 212460 17127155 ~ 17264404 (+)
AMCG00012387 NA other downstream 470241 17384936 ~ 17388799 (+)
G136489 NA other downstream 497066 17411761 ~ 17476097 (+)

Expression


Co-expression Network