G136392


Basic Information

Item Value
gene id G136392
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17126206 ~ 17129299 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171407
TTTAAATCTTCCCATAGTGTAGACCAGGTGGTCATTTATTCAGTAACCAAACAAAGCCACGACACAAgagagccatctcagtggaacaggcagagagagagagacagagtgagttCCCCACATGGCAGCCAGCTCCCAGGCACAATTAGCTGAAGCCCGCCTGCTTGCTCGCCAGACGGCCAATCAACTGCCAGAATTCCAGGAAGGTGAGCTCGCCGTCATTGTTCTCGTCCAATGAGCTCATGAGCTGGTCCACCGCTGCCGGGTCACTGGAGTTCTGCAAGAAGTGGGCAGCTGCGAGGACACCAGGCTGCGGAACTCGTCTCGGCTCAGCGTGTCGCCGCGCCCGTCGCCCCCTGCGAAGGTCTTGAACTGGCCCACCAGTGTGTTTATAGCTGCCTCCATAGCGGTGCGGTGAGGTGGCTTGTGTGGTTGtttgtgtggtggtggtggtttggCGTTCCGAGCCCTGGAAAaaagacagcagcagcagcagcagtggcaggAGTgacaggtctctctctctctccctgctctccctctctctggcttTATACTCTACCTATCCCTTGGAATATCCGAGGTCAGCGGAAAATAGATAATTTACTTTTTCtgctttgtgttcttttttccccatgatAGCTGTAGTTGACAAGGTGACATTGTACACCTggatacacactcacactaagAGATAttaactcacacacacactcacactcagagatacaatctcacacacacacactcagagatacatacatgtacacacacactcacactcagagagatacacacatgtacacacactcacactccgAGAGAtacaatctcacacacacacacacactcagagagATACACATacgtacacacactcacactccgAGAGAtacaatctcacacacacacacacactcagagagATACACATacgtacacacactcacactcagagacatccacatccacacacacacatttaag

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171407 True 987 lncRNA 0.51 4 17126206 17129299

Neighbor

gene id symbol gene type direction distance location
AMCG00012373 NA coding downstream 43999 17080907 ~ 17082207 (-)
AMCG00012371 NA coding downstream 136097 16985862 ~ 16990109 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding downstream 160335 16960383 ~ 16965871 (-)
AMCG00012361 NA coding downstream 174375 16945305 ~ 16951831 (-)
AMCG00012362 NA coding downstream 202222 16922806 ~ 16923984 (-)
AMCG00012384 NA coding upstream 116791 17246090 ~ 17254514 (-)
AMCG00012383 NA coding upstream 135464 17264763 ~ 17267311 (-)
AMCG00012390 NA coding upstream 215055 17344354 ~ 17364449 (-)
AMCG00012394 NA coding upstream 330624 17459923 ~ 17465336 (-)
AMCG00012399 adar coding upstream 378625 17507924 ~ 17511092 (-)
G136383 NA non-coding downstream 21749 17102403 ~ 17104457 (-)
G136382 NA non-coding downstream 32849 17092543 ~ 17093357 (-)
G136376 NA non-coding downstream 69205 17056612 ~ 17057001 (-)
G136372 NA non-coding downstream 86240 17039337 ~ 17039966 (-)
G136307 NA non-coding downstream 169847 16956142 ~ 16956359 (-)
G136391 NA non-coding upstream 16123 17145422 ~ 17148086 (-)
G136409 NA non-coding upstream 63442 17192741 ~ 17193982 (-)
G136411 NA non-coding upstream 67936 17197235 ~ 17198702 (-)
G136423 NA non-coding upstream 130689 17259988 ~ 17261894 (-)
G136435 NA non-coding upstream 159800 17289099 ~ 17290083 (-)
AMCG00012372 tpm3,LOC106570192 other downstream 27481 17064556 ~ 17098725 (-)
AMCG00012365 NA other downstream 211521 16911492 ~ 16914685 (-)
G136223 LOC105892008 other downstream 426415 16699475 ~ 16699791 (-)
G136222 NA other downstream 427096 16698642 ~ 16699110 (-)
AMCG00012340 NA other downstream 693393 16415107 ~ 16432813 (-)
G136412 NA other upstream 72475 17201774 ~ 17203233 (-)
AMCG00012385 NA other upstream 79479 17208778 ~ 17217639 (-)
G136408 NA other upstream 104629 17233928 ~ 17242827 (-)
AMCG00012391 NA other upstream 250881 17380180 ~ 17381595 (-)
AMCG00012393 NA other upstream 287275 17416574 ~ 17434113 (-)

Expression


Co-expression Network