G136444


Basic Information

Item Value
gene id G136444
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17300527 ~ 17304999 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171471
TcaggaacatttttattttagaaaaagaaGAGATTAATGCCATAGATGTGAAATCTACAAAACATAGTAACAATTcagatgaaaatacaaatatgactcAACTATAAACACTGAGTTATTAGCCATATTTTAACAGcagttttaaaaactgaaactaacagttaataattaaaatctcagTCAACTAAGTCATCCAgggtaataacaataatagtcaTTAATAGTGACCAACATATgaccaaaacaacaactttcACTTTTCAAGGGATACCTTTGTTGCAGTCGCAGGTGTGTCGAAGTCAGCAGCTGTCTTCTGATgatcaaatgcaaatgcaaattagCATGGACTACTGCAGGAGTGACTACTTTCTGGTTTGTTTCGGACTACCTTTTTTAAATCtagattaaaacacaaatctggGGTGTAGAATGGATATGTTGTCGTCCATAAATTACACCCCCACCCCGTCATAACTCAGAATAGTAGGTTTCTGGTGACCATCAAGAAAACAGTGGGCACTGGCTGACTGCTACAATACAAAGATACTGATACATACAGCTTTTAACATCACggtttgtgtaattttaatgtACAAATTCAATCCAGTACAGATATATCAAGTATGAATACACTGCTGAGATTTAACGTTGCATGCTTAACTGAAACTCTTCCCACTCTGTGAGCAGCTGTACGATTTCTCTCGTGTGTGAACGCGCTGGTGAGAATTAAGTTGTCCTGCCTTggtgaagctcttcccacactgggagcagctgtACGGTTTGTGCCCAGTGTGGATGAGCTGGTGTGATTTAAGGCTTCCTGCGTgagtgaaactcttcccacactgggggCAGCTATATGGTTTCTCTCCAGTGTGACTGcgctggtgagatttaaggTTCCCAGTCTGGGTGAAGCACATCCCACACAGGGGGCAactgtatggtttctctcctgtgtgaatgcgctggtgtctTTTAAGGCTTTCTGCATGAGTGAAACTCATCCCACACAGGGGGCAACTGTACGGTTTCTCCCCCGTGTGAATGCGctgatgtattttaaagctttttgcatGACAGAAGCTCTTTCCACACAGAGAGCAACTGTATGGTTTCTCCCccgtgtgaatgcgctggtgacgTTTAAGGCTTACTGCCTGAGTGAAGCAATTCCCACACAAGGAACAgctgtacggtttctctcctgtgtgaatgcactGGTGTAATTTAAGGCTGTTTGCCTgagtgaaactcttcccacactgggagcagatGAACGGTTTCTCCCCTGTGTGAATACGCTGGTGTGTTTTAAGATCTGATGCACTggtgaagctcttcccacacaggGTGCAGCTGTGCACTCTTTTCCGTGTCAGAATGCATTGGTGTCTTTNNAAGCTTCCAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171471 True 1411 lncRNA 0.43 2 17300527 17304999

Neighbor

gene id symbol gene type direction distance location
AMCG00012389 LOC107549236 coding upstream 10632 17269066 ~ 17289895 (+)
AMCG00012377 NA coding upstream 41928 17255412 ~ 17258599 (+)
AMCG00012379 NA coding upstream 57698 17238280 ~ 17242829 (+)
AMCG00012382 NA coding upstream 65593 17231345 ~ 17234934 (+)
AMCG00012378 NA coding upstream 78113 17221383 ~ 17222414 (+)
AMCG00012388 krtcap2 coding downstream 64264 17369263 ~ 17371553 (+)
AMCG00012386 NA coding downstream 69961 17374960 ~ 17380121 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding downstream 192455 17497454 ~ 17504572 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 224774 17529773 ~ 17537629 (+)
AMCG00012397 NA coding downstream 247587 17552586 ~ 17578771 (+)
G136436 NA non-coding upstream 9998 17290145 ~ 17290529 (+)
G136351 NA non-coding upstream 128421 17164976 ~ 17172106 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding upstream 322314 16957458 ~ 16978213 (+)
G136297 NA non-coding upstream 343232 16956689 ~ 16957295 (+)
G136286 NA non-coding upstream 385832 16912235 ~ 16914695 (+)
G136457 NA non-coding downstream 25795 17330794 ~ 17332570 (+)
G136458 NA non-coding downstream 34579 17339578 ~ 17340736 (+)
G136486 NA non-coding downstream 97020 17402019 ~ 17402360 (+)
G136490 NA non-coding downstream 114216 17419215 ~ 17462685 (+)
G136538 NA non-coding downstream 183351 17488350 ~ 17488827 (+)
G136341 NA other upstream 36123 17127155 ~ 17264404 (+)
AMCG00012374 NA other upstream 171188 17126013 ~ 17129339 (+)
G136296 NA other upstream 300438 16963330 ~ 17000089 (+)
G136258 NA other upstream 424927 16871838 ~ 16875600 (+)
G136255 NA other upstream 433079 16866537 ~ 16867448 (+)
AMCG00012387 NA other downstream 79937 17384936 ~ 17388799 (+)
G136489 NA other downstream 106762 17411761 ~ 17476097 (+)
G136499 NA other downstream 154485 17459484 ~ 17466059 (+)
AMCG00012401 adar other downstream 204373 17509372 ~ 17522821 (+)
G136558 NA other downstream 242369 17547368 ~ 17547968 (+)

Expression


Co-expression Network