G136470


Basic Information

Item Value
gene id G136470
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17314908 ~ 17318479 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171500
ttttattttagaaaaagaaGAGATTAATGCCATAGATGTGAAATCTACAAAACATAGTAACAATTcagatgaaaatacaaatatgactcAACTATAAACACTGAGTTATTAGCCATATTTTAACAGcagttttaaaaactgaaactaacagtttaaaaaaaaacaacaacacagtgaACTGGAAAATCTCAGACAATTAAGTCATCCCGGGTAAGGactctgttaataataatactgggGTACTTAATGTGTGGCACAGATTAGTGTCATTCACTGCTGGAGAATGAAGTCAGACACAGAACTGAGTGAATTTCCCAGACAGACACTGATGtctaatgcctcggttccactggcttaagcgtccgtgccgtgtTGTGCCGTGCCGGattcccagagctttttttgtaaatccAGGCAGCTGtgaatccgtccctctgatgggaggagcagcgactgtgggtttggtttgtgttttttttattttttaaaacaaaaacagagaacagtacgagcgatagagcctgacgtgaaaaatacttttgtgtgtgttttattctttgtgttttacatgattgtaaacagcgtaataaatacacgtttctgttcagagatattaggaagagctaaacgtgtagacaacattatattcagacacgcatgttcacataagaatacgtttccatgtgcaacaatatctacatatttgctatttagtattattatcatcatcatttgtgatagtatgtatgtattttaaatggcacaacgtgactcccttaacttattactctttctgcagatttgtaactgcaaacaatactttttgccgaattatttataatgtacttatcagatcCTTAACCCGGGCAAGtaacagctgaaacaaaatacacacgtttcatgattaatcatccagctacaatatagcaggtttaattgaactaaagtgtgcgcgtctcagtcatggcgtttatggactcatttattaaaccagtccttaatgttttagagggaaacccagatctgcttatttatttattcattaatttatcttgtaaatggacacacgttaactgaatcgtgttcgccttcctACTGAttgtctgcggattgtcctgcacaccattcacaaaacacagcctgaaacacgtccagttattaatattgtatgaataacATCGGCTCCTACCGatctgattattatccttcagtttattttaactagtcactgCATTGCACCGGTCCTGCGTTaatacactcagatattaactgtaagcagtcattgtttctgtacatggatttcactccatgttgctaataaaactaatttcttcgtgatcccacacggcatttgagattatatctATGTTTACAAGTCAAGCGCACAGCTCCACTGAAAGCGACTCATTTCCTGGGCGATTCTCTTTTCAAGGTTTACATTTCTTGCAGTCACAGGTGTGTCAAAGTCAGCAGCTGTCTTCTGATAGTTCTTCAATCAGAGTTAATGCAAATTATCATGGACTACTGTGGGAGTGACTActttctggtttgttttggactgctttgttttctagattaaaaaacaaatctggggTGTAGAATGGATATGTTGTCGTCCATAAATTACACCACCACCCTGTCATAACTCAGAACAGCATTTTTCTGGTGACCATAAAGAAAACAGTAGGCGCTGGCCGAGTGATACAATACAAAGATACCTTGAGAGACTAATACATACAGCCAGGAACGTCACAAATGGGAGTGAACAGGGGAAATGATTCACACACCCCGTGTGTAGAAAACACTAATGAGTAAACAACAACTCACATCCTCTACATAAATTGGTGCATATACCTCCACCCACCCCCATCCTCCCTATGGGAAATGGTTTGTCCCAAGTCGCATATGCAGTCCTGCACAACTGCATGTTCAGGCCAGAGAGAAAACGAAACTGTAGCACTGAAATGTGGAAATCTGTACGTCTGTGATTTTTTGCTATAACACAGGAGAAATCACCTTCTACTGCCtggctttttgtattttttattctgtcatAGTTGCAAAACATTGGACAATTTCCACCCTCCTCTGTGACaaacaaattttaaattttCAAATCTATTGCTCTCCAGATTCTCTCTAGTATGAATACACTGGAAGAAATTTAAGGTTGCTTTAAGGGAAGCTCTTCCCACTCTGGGAGCAGCTGTACAATTTCTCCTCCTGTGTGAGTAAGCTGGTGACGTTTAAGGTTTCCTCCATGAATGAAACTCTTCTGACACAGGGAACAGCTGTATGGTTtctcccctgtgtgtgtgagatggtGTGTTTTAAGGCTCTTTGCATGAcggaaactcttcccacactgggaacaGCTGTACGGTTTCTCCCCTGTGTGAATGAGTTGGTGTGATTTAAGGTTTGCTGCCTGcgtgaaactcttcccacacaggGAACAGCAGTAGGGTTTCtcccctgtgtgaatgcgctggtgacaATTAAGGTCTCTTGTGTtagtgaagctcttcccacactctGAGCAACTGTAGGGCTTCTCCCCTGTGTGACTGTGCTGATGTAATTTAAGGTTGTTTGTATGACTGAAGCTCTTTCCACACAGGGAGCAGCAGTACGGTTTCTcacctgtgtgaatgcgctggtgagaaTGAAGGCCTCCTACATTgttgaaactcttcccacataGGGAGCAGGTATATGGTTTCTCACCTGTATGAATACGCTGGTGAGCTTTCAGTTTTGACGCATAATcaaagctcttcccacactgggggcagctgtacggtttctcccctgtgtgaatgcgctggtgtgttTTAAGGTTTGCCGTCTgagtgaaactcttcccacactgggagcagctaTACGGTTTCAcacctgtgtgaatgcgctggtgagtTTTAAGGTTTGCGGCCTgagtgaaactcttcccacactgggagcagctgtacggtttctctcctgtgtgaatgcgctggtgagatATCAGACTTTTTGCCCcagtgaagctcttcccacacaggGTGCAGCTGTGCACTCTTTTCTGTGTCAGAATGCATTGGTGTCTTTTTAAGCTTCCAGAGTTCCTGTACGTTTTCTCACAGTGGGGGCAGCGATGGCAGCCCTGATGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171500 True 3152 lncRNA 0.41 2 17314908 17318479

Neighbor

gene id symbol gene type direction distance location
AMCG00012383 NA coding downstream 47597 17264763 ~ 17267311 (-)
AMCG00012384 NA coding downstream 60394 17246090 ~ 17254514 (-)
AMCG00012373 NA coding downstream 232701 17080907 ~ 17082207 (-)
AMCG00012371 NA coding downstream 324799 16985862 ~ 16990109 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding downstream 349037 16960383 ~ 16965871 (-)
AMCG00012390 NA coding upstream 25875 17344354 ~ 17364449 (-)
AMCG00012394 NA coding upstream 141444 17459923 ~ 17465336 (-)
AMCG00012399 adar coding upstream 189445 17507924 ~ 17511092 (-)
AMCG00012398 NA coding upstream 201176 17519655 ~ 17523079 (-)
AMCG00012400 NA coding upstream 208396 17526875 ~ 17527534 (-)
G136450 NA non-coding downstream 4858 17302926 ~ 17310050 (-)
G136437 NA non-coding downstream 24512 17290140 ~ 17290396 (-)
G136435 NA non-coding downstream 24825 17289099 ~ 17290083 (-)
G136423 NA non-coding downstream 53014 17259988 ~ 17261894 (-)
G136411 NA non-coding downstream 116206 17197235 ~ 17198702 (-)
G136469 NA non-coding upstream 32341 17350820 ~ 17351911 (-)
G136517 NA non-coding upstream 83500 17401979 ~ 17402366 (-)
G136518 NA non-coding upstream 83958 17402437 ~ 17402721 (-)
G136521 NA non-coding upstream 97448 17415927 ~ 17416475 (-)
G136525 NA non-coding upstream 129051 17447530 ~ 17448098 (-)
G136408 NA other downstream 72081 17233928 ~ 17242827 (-)
AMCG00012385 NA other downstream 97269 17208778 ~ 17217639 (-)
G136412 NA other downstream 111675 17201774 ~ 17203233 (-)
G136378 NA other downstream 181001 17093499 ~ 17133907 (-)
AMCG00012372 tpm3,LOC106570192 other downstream 216183 17064556 ~ 17098725 (-)
AMCG00012391 NA other upstream 61701 17380180 ~ 17381595 (-)
AMCG00012393 NA other upstream 98095 17416574 ~ 17434113 (-)
AMCG00012392 NA other upstream 156169 17474648 ~ 17483359 (-)
G136544 NA other upstream 185139 17503618 ~ 17503986 (-)
G136625 NA other upstream 367853 17686332 ~ 17688512 (-)

Expression


Co-expression Network