G136545


Basic Information

Item Value
gene id G136545
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17504183 ~ 17505377 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171624
GCCGTTTGGAAAGAAGGAAACCTCACTGAACAGCAGATGTACACTAGAGTTGGACATTCATGGTAAgaaagatggagggagggagggagggagggaaaggggtAGAAAGATGAGAGGGGTAAAGGGACAGGTTTGGTGAAAAGGTATAAAGAAAAGTGGAGGGAGagggttaaagaaaaaaataagacattaaaaaaaacaatacacactgTGGACAAAAGTATTGGGACGGCAACCAAAATACCCCAAATTGACCGCCGGTCCCAGTGTGTGTGACTGGGAGGGAGCtgggcagtgcagtgcagtttgtacagcacagaggaaagagagagaggggcaaagAAGACCCATCCCCCCATCCATACCCCaaaagaacagagagagagcagactGGAATGGAAAAGAGATATAAAAGGACCCCCCTGCAAGCTTCCTCACACACGCtggctcgctctctctctctcagattccGCGGTCCTTCCTCCTCTAGGACTCTATTGGCTGCTGTCGGCCCCGCCCCCTCCTCCTGTGTATAGGGTACCCTCTGTATTCCGATTGGCTGGTCACAGCCGCCTGGCAACGCTTTGTCCTTTGCTTCTGATTGGTGAATGTCTCAATCCAGTCAGACGCAGCCATCACAGTTTCCTTGGTCCTGATTGGACTGTGCCGTTTCTCTTCTTCAGTGGTGGAAAAGTGGTGAGGAGGGGTgtggggatgtgtgtgtgattggcCCTCGTTCCTGTCATTCTGGTAGGAGGGGCGGCGGAGTAGGAGGGGGCGGGGCCGGGAGGAGCCCTGGGATTGGTCACTCGGGGCTGTGGACGATGGTCTTGGCGGTGTAGTTCTGGAACAGCGGCTGCAGGAACATGCCGACGGTGCCGAACACGCACACGAACACAAAGATCCACAGGAACAGCCGGTCGATCACCATCGCAACGTACTTCCAGTCCTCGCTCACCTGCAGCAGAGAGCAAGGGgtcacacaccaacacacacaccgaaacacacatgctgacacacataatgacacacacacatactgacacactaacacacactgacacaaactgACATACTGGCACAGGCTGActcacacatactgacacacaggcatacacacatactgacacattgtcacacacacttactgagacgcacacacacacacactgaaccaCACGCAGATgcattgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171624 True 1195 lncRNA 0.52 1 17504183 17505377

Neighbor

gene id symbol gene type direction distance location
AMCG00012394 NA coding downstream 38847 17459923 ~ 17465336 (-)
AMCG00012390 NA coding downstream 139734 17344354 ~ 17364449 (-)
AMCG00012383 NA coding downstream 236872 17264763 ~ 17267311 (-)
AMCG00012384 NA coding downstream 249669 17246090 ~ 17254514 (-)
AMCG00012373 NA coding downstream 421976 17080907 ~ 17082207 (-)
AMCG00012399 adar coding upstream 2547 17507924 ~ 17511092 (-)
AMCG00012398 NA coding upstream 14278 17519655 ~ 17523079 (-)
AMCG00012400 NA coding upstream 21498 17526875 ~ 17527534 (-)
AMCG00012409 NA coding upstream 129480 17634857 ~ 17635861 (-)
AMCG00012408 NA coding upstream 141795 17647172 ~ 17649026 (-)
G136536 NA non-coding downstream 34407 17467889 ~ 17469776 (-)
G136525 NA non-coding downstream 56085 17447530 ~ 17448098 (-)
G136521 NA non-coding downstream 87708 17415927 ~ 17416475 (-)
G136518 NA non-coding downstream 101462 17402437 ~ 17402721 (-)
G136517 NA non-coding downstream 101817 17401979 ~ 17402366 (-)
G136574 NA non-coding upstream 8203 17513580 ~ 17514289 (-)
G136581 NA non-coding upstream 41989 17547366 ~ 17547973 (-)
G136589 NA non-coding upstream 73077 17578454 ~ 17579296 (-)
G136602 syt11a,LOC105906331,LOC107745033,LOC103033225 non-coding upstream 104115 17609492 ~ 17609910 (-)
G136578 NA non-coding upstream 114762 17620139 ~ 17621187 (-)
G136544 NA other downstream 197 17503618 ~ 17503986 (-)
AMCG00012392 NA other downstream 20824 17474648 ~ 17483359 (-)
AMCG00012393 NA other downstream 70070 17416574 ~ 17434113 (-)
AMCG00012391 NA other downstream 122588 17380180 ~ 17381595 (-)
G136408 NA other downstream 261356 17233928 ~ 17242827 (-)
G136625 NA other upstream 180955 17686332 ~ 17688512 (-)
G136666 NA other upstream 215349 17720726 ~ 17724068 (-)
AMCG00012416 NA other upstream 251957 17757334 ~ 17764561 (-)
AMCG00012414 NA other upstream 262033 17767410 ~ 17779122 (-)
AMCG00012437 LOC106580258 other upstream 592800 18098177 ~ 18102329 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 misc NC_035907.1 CM008310.1 5959321 ~ 6012784 (-)