G136602 (syt11a,LOC105906331,LOC107745033,LOC103033225)


Basic Information

Item Value
gene id G136602
gene name syt11a,LOC105906331,LOC107745033,LOC103033225
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17609492 ~ 17609910 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171709
GGAGAACCTAGAACTCATTGAGGGGGTGCCACTTGGCGACCTGCCGCCTGGGGTTGTCACAGACCTCCCGCCAGTGGGTGGCGCCGGAGGGGCTGGGGGAGTGCGCGCCCAGCACCAGCCGCCCCACCACCTCGTTCTTGGTGGTGCGGTCGAAGTCGATGACCAGGAACTCCACGGAGACGTCGTGCAGCAGCTCGGCTGGCACGTCGTAGATGAAGGACTCGTTGAACACGGGGTTCAGGGTGCACTTCTTCACGTGGGTCTTCTTCTTGGCGATGCGCTTGCGGCCGTAGAACACGTTCACCTTCACGTAGGGgtctgggagagagggagagagagaaagaaagagtgaggGTGGGCGCCGAGGTCATCACTGAAGGGAAAACTGTGAAAAGGaattgctgtgctgtagtgtactg

Function

symbol description
syt11a Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human SYT11 (synaptotagmin 11).

NR:

description
PREDICTED: synaptotagmin-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171709 True 419 lncRNA 0.61 1 17609492 17609910

Neighbor

gene id symbol gene type direction distance location
AMCG00012400 NA coding downstream 81958 17526875 ~ 17527534 (-)
AMCG00012398 NA coding downstream 86413 17519655 ~ 17523079 (-)
AMCG00012399 adar coding downstream 98400 17507924 ~ 17511092 (-)
AMCG00012394 NA coding downstream 144156 17459923 ~ 17465336 (-)
AMCG00012390 NA coding downstream 245043 17344354 ~ 17364449 (-)
AMCG00012409 NA coding upstream 24947 17634857 ~ 17635861 (-)
AMCG00012408 NA coding upstream 37262 17647172 ~ 17649026 (-)
AMCG00012415 NA coding upstream 81831 17691741 ~ 17697285 (-)
AMCG00012419 psmd4,LOC102080581,LOC102799202,LOC101479706,LOC103358749 coding upstream 172577 17782487 ~ 17795215 (-)
AMCG00012421 NA coding upstream 219097 17829007 ~ 17842851 (-)
G136589 NA non-coding downstream 30196 17578454 ~ 17579296 (-)
G136581 NA non-coding downstream 61519 17547366 ~ 17547973 (-)
G136574 NA non-coding downstream 95203 17513580 ~ 17514289 (-)
G136545 NA non-coding downstream 104115 17504183 ~ 17505377 (-)
G136536 NA non-coding downstream 139716 17467889 ~ 17469776 (-)
G136578 NA non-coding upstream 10229 17620139 ~ 17621187 (-)
G136605 NA non-coding upstream 18977 17628887 ~ 17630828 (-)
G136607 NA non-coding upstream 33601 17643511 ~ 17643758 (-)
G136616 NA non-coding upstream 53545 17663455 ~ 17664170 (-)
G136623 NA non-coding upstream 72297 17682207 ~ 17684183 (-)
G136544 NA other downstream 105506 17503618 ~ 17503986 (-)
AMCG00012392 NA other downstream 126133 17474648 ~ 17483359 (-)
AMCG00012393 NA other downstream 175379 17416574 ~ 17434113 (-)
AMCG00012391 NA other downstream 227897 17380180 ~ 17381595 (-)
G136408 NA other downstream 366665 17233928 ~ 17242827 (-)
G136625 NA other upstream 76422 17686332 ~ 17688512 (-)
G136666 NA other upstream 110816 17720726 ~ 17724068 (-)
AMCG00012416 NA other upstream 147424 17757334 ~ 17764561 (-)
AMCG00012414 NA other upstream 157500 17767410 ~ 17779122 (-)
AMCG00012437 LOC106580258 other upstream 488267 18098177 ~ 18102329 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G419143 NA non-coding NC_048569.1 CM023223.2 57358328 ~ 57358619 (-)
striped catfish (Pangasianodon hypophthalmus) G400328 syt11a,LOC108272614,LOC103033225,LOC108441802,LOC107672847,LOC107745033 non-coding NC_047623.1 CM018569.1 4851977 ~ 4867761 (+)