G136641


Basic Information

Item Value
gene id G136641
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17764145 ~ 17767531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171770
GTTGGGGTGTGTGTGCAGGGCGTGGGGCAGCAGTCCGGGCCGCTGCTCCGGGTGCTCGTGCCGCGCAGTGAAGAGGACCTGCTGAGCGTCAGGGTGCAGTTCCACCGCCAGCACGGCCGCTCGCTCTACTCCACCCTGCAGGAGGCTGTGAAAGGAGAGTACCAACATGCCCTGCTGGCTCTGTGTGGTGCCGAAGACATCTGAGGCCAGACAGGCAACAGCCCATAAACTGCACAATACAGACAATAAAATATACCAGCCTTTGTTTCATGActattttaaaggttttttttcgtattttattatttacatccTGTGTAAAAGGTTGACAAGTTAGTGCACACCACATACAATGTACAAAAGAGATCGAGGGAAAAACTGAGAACACAACCAAGGTGGTACAGtcagaaagaaataaaaccacagacGCACAGAGCAGAGGGAAACTGGAGAAAGGAAACGGTTCACAAGTAATATATTATAGCCTGGTACGGCACAGTCCcccagagacacagtccagacACCTCCCCCTGCCCCCAACCGTTCAGCACCAACCGTTCAGACAATTCTGCTTCCTTACCAGTTTGGTTTTGTCCCTTATTAAACACACAGCCTTTAAATCACCTGTACCATGTGACGCCGGCTACACGCTGTACTGCAGCGCTGTGAGGAAAGGTGGAAATACACGATcaaagcaacaaaaataaatctaaagcaAGTTCAAATCCCTccctgcagtaaaaaaaaataaaaaataaaaatacaatcagaccttaatacaataaaaaagcacaagaaaagtGCAGAACAGGATCGAGACATGGAGACTACAGAGCCCGAACCCAGCGCTGTGATTGGTCGAGCGAGGTGTCCGTCAGACACCCGAGTCCCCCTCCTTCCTCCCTTTGTTAGTGTCAGGATGTtatactataaaaaaaacacactagaCAGAACACAATCTTCTCATCTCTTTCTAAACAGCCGTTTCCACGTATTGTTTTCAACTCTAACCTGGATTATAAATGCCAAACACGGGGGGGGGAGACCCTGCTGGCCTGGActgtctccccctccccccccaggaccagggccAGAGACACCGGCACATCCAATCCACTCCACACTCTGCCCAGTTCGTTAATTGCTTAATGACTCGCACCGTCGCCTCCTGCCCTGCTGTCTGCGCTGCCCTGGGATTGTTATTACGGCACCTCCCCCCACACGAACACCACACACTGAGGGATGACCACAGAGCCCTGCAGCAGAGCGCgggaggaagaaggagagaggagaggaagaaaaaggggagagaaaggaggaggaggaagggggagagaggggagaggaagaagaggggaaagagtgggaaaggtgagAGATAAACAACCCTGCTGGAACCCTCAACATCCACGTCCAGGTCGCCCTGAACACGTGGGCTGACCCCACGACCCTgcgccccccccaccacacacacacacacacacacacacacacacacacacaggccataTTGCTACTAGTAGCAgctatattactttttttttcgtCTTTGTTAAGTGTTTTGATACGAGTAGGGAGCACAAAGTCACTATCtatagaaagaaaagaaagactatGTGTTGACTGGATGAATGACTGATTGGCAGGCCTGCACGCGCTTTGGCCGTGGTAAATCATTTCAGCCACAACATTCTGAGGAGGAAACAATAAAACGAAACGCAGAAGACAACGAAAAACCAACCGACCACGCAACCACAAAACTGGACTGCGACCAGCAGTCGACTAAATAATAACATCAGCATCATAATCAGAGTaatataaaagtaaacaaaatgcgACGGAAGAGGAGCAAGCCGAATCGCCACTAACCACGGGAGAGGGGCCTCCCGAGAGCCACACCGACCTggccacagcacacacacacagaaaaaatgtacaggagtattacaaacattacAAATACCAGAAAACTAGCCCCCagttgcaaaaaaaacaatagtatcagaatattaataataataataataataataataataacaacaaatacaatagtTATTCACATTATTCCAAAcgaacaagaaaagaaaagctctCTAGGTATGTACAGATATAAAATGCACTGTGGGGGGTTCCATATTCCTTTATTCGCTCCCCCCCCACTATCAGCTGTCTGTATACATCAGAAATAAACTAGGAGAcgaaaaaaaatatacaaatcgacaaaaatacaagttacagctgtttgtgtttcttgttggttttaaaaagacaaaggaTTAAAATTCTCTACTGTCCCCCCATCTCGGTCCGTTTGAGACCCCGCTCGGTCTGCGGGTAAAGGTTCTGGCGCTGTAGTGAAGCAGTCCGTCAGTCGTGTAGCGATTCACTTATTTACAGGGGTGTCGAGAAACCAGTTCCGAGACttattattgaaatgaaacGTTCTCCCATTAGAATTAAAAAGGGGTTTCCCGAAGGGGCAGGAGCGAGTCTCCGGCCGTGGCACGGATTAAAACGGGGGAGGAACTGTGCGGAGAGGGAACAGACACtgaataaaaagagagagagagtgagagagggagcaTGGACTTGTGATCCGCACTGAACTCGCAGGAGATGGGGGGACAAAAAGAGCagagaaaagaataaaaaaaatctagaacTGTTTGTGTTATAATGCTAGAAAAAGTGAGACTTActaatgctctctctctccctccactaACCTCAGTACCTTTTCTCAATGGCCAACGCCCCCTCACCCTCCTCTCCTTCCGCGGCAAAATCCCACCTCATCACGGTGACAGGTGCGGTTCCCGTCTCACGGCTTATCGGGGCCGCCGGTCTTGCGGGCAGCGATGAAGGCCATGCCGTGGGTGCGGAAGTGCGTACTGAGGTCGGCCGCCCGCTCGAAGCGCCGGCGGCACACGCGGCACGCCAGCC
>TU171771
GTTGGGGTGTGTGTGCAGGGCGTGGGGCAGCAGTCCGGGCCGCTGCTCCGGGTGCTCGTGCCGCGCAGTGAAGAGGACCTGCTGAGCGTCAGGGTGCAGTTCCACCGCCAGCACGGCCGCTCGCTCTACTCCACCCTGCAGGAGGCTGTGAAAGGAGAGTACCAACATGCCCTGCTGGCTCTGTGTGGTGCCGAAGACATCTGAGGCCAGACAGGCAACAGCCCATAAACTGCACAATACAGACAATAAAATATACCAGCCTTTGTTTCATGActattttaaaggttttttttcgtattttattatttacatccTGTGTAAAAGGTTGACAAGTTAGTGCACACCACATACAATGTACAAAAGAGATCGAGGGAAAAACTGAGAACACAACCAAGGTGGTACAGtcagaaagaaataaaaccacagacGCACAGAGCAGAGGGAAACTGGAGAAAGGAAACGGTTCACAAGTAATATATTATAGCCTGGTACGGCACAGTCCcccagagacacagtccagacACCTCCCCCTGCCCCCAACCGTTCAGCACCAACCGTTCAGACAATTCTGCTTCCTTACCAGTTTGGTTTTGTCCCTTATTAAACACACAGCCTTTAAATCACCTGTACCATGTGACGCCGGCTACACGCTGTACTGCAGCGCTGTGAGGAAAGGTGGAAATACACGATcaaagcaacaaaaataaatctaaagcaAGTTCAAATCCCTccctgcagtaaaaaaaaataaaaaataaaaatacaatcagaccttaatacaataaaaaagcacaagaaaagtGCAGAACAGGATCGAGACATGGAGACTACAGAGCCCGAACCCAGCGCTGTGATTGGTCGAGCGAGGTGTCCGTCAGACACCCGAGTCCCCCTCCTTCCTCCCTTTGTTAGTGTCAGGATGTtatactataaaaaaaacacactagaCAGAACACAATCTTCTCATCTCTTTCTAAACAGCCGTTTCCACGTATTGTTTTCAACTCTAACCTGGATTATAAATGCCAAACACGGGGGGGGGAGACCCTGCTGGCCTGGActgtctccccctccccccccaggaccagggccAGAGACACCGGCACATCCAATCCACTCCACACTCTGCCCAGTTCGTTAATTGCTTAATGACTCGCACCGTCGCCTCCTGCCCTGCTGTCTGCGCTGCCCTGGGATTGTTATTACGGCACCTCCCCCCACACGAACACCACACACTGAGGGATGACCACAGAGCCCTGCAGCAGAGCGCgggaggaagaaggagagaggagaggaagaaaaaggggagagaaaggaggaggaggaagggggagagaggggagaggaagaagaggggaaagagtgggaaaggtgagAGATAAACAACCCTGCTGGAACCCTCAACATCCACGTCCAGGTCGCCCTGAACACGTGGGCTGACCCCACGACCCTgcgccccccccaccacacacacacacacacacacacacacacacacacacaggccataTTGCTACTAGTAGCAgctatattactttttttttcgtCTTTGTTAAGTGTTTTGATACGAGTAGGGAGCACAAAGTCACTATCtatagaaagaaaagaaagactatGTGTTGACTGGATGAATGACTGATTGGCAGGCCTGCACGCGCTTTGGCCGTGGTAAATCATTTCAGCCACAACATTCTGAGGAGGAAACAATAAAACGAAACGCAGAAGACAACGAAAAACCAACCGACCACGCAACCACAAAACTGGACTGCGACCAGCAGTCGACTAAATAATAACATCAGCATCATAATCAGAGTaatataaaagtaaacaaaatgcgACGGAAGAGGAGCAAGCCGAATCGCCACTAACCACGGGAGAGGGGCCTCCCGAGAGCCACACCGACCTggccacagcacacacacacagaaaaaatgtacaggagtattacaaacattacaaataccccccccaaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171770 True 2946 TUCP 0.49 4 17764145 17767531
TU171771 False 1975 TUCP 0.50 3 17764145 17766491

Neighbor

gene id symbol gene type direction distance location
AMCG00012411 NA coding upstream 12690 17730997 ~ 17751455 (+)
AMCG00012412 NA coding upstream 50835 17700146 ~ 17713310 (+)
AMCG00012413 ssr2,LOC106570196,LOC106588555,LOC107748705 coding upstream 72862 17689118 ~ 17691283 (+)
AMCG00012410 NA coding upstream 75674 17683394 ~ 17688471 (+)
AMCG00012402 NA coding upstream 84180 17676665 ~ 17679965 (+)
AMCG00012418 NA coding downstream 39028 17806559 ~ 17814564 (+)
AMCG00012428 NA coding downstream 170406 17937937 ~ 17941562 (+)
AMCG00012429 NA coding downstream 235108 18002639 ~ 18006774 (+)
AMCG00012432 NA coding downstream 395045 18162576 ~ 18169744 (+)
AMCG00012431 NA coding downstream 406479 18174010 ~ 18179817 (+)
G136571 NA non-coding upstream 99975 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 115038 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 128184 17623113 ~ 17635961 (+)
G136539 NA non-coding upstream 274601 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 275318 17488350 ~ 17488827 (+)
G136718 NA non-coding downstream 133377 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 494366 18261897 ~ 18269507 (+)
G136848 NA non-coding downstream 527684 18295215 ~ 18317076 (+)
G136866 NA non-coding downstream 666039 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 705702 18473233 ~ 18474916 (+)
AMCG00012417 NA other upstream 3863 17755420 ~ 17760282 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other upstream 110683 17649265 ~ 17653462 (+)
G136566 NA other upstream 117240 17645641 ~ 17646905 (+)
G136558 NA other upstream 216177 17547368 ~ 17547968 (+)
AMCG00012401 adar other upstream 241324 17509372 ~ 17522821 (+)
AMCG00012423 LOC102799202,LOC107564869 other downstream 24720 17792251 ~ 17795244 (+)
G136658 NA other downstream 73402 17840933 ~ 17843921 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other downstream 135301 17902832 ~ 17903810 (+)
AMCG00012439 NA other downstream 362753 18130284 ~ 18134381 (+)
G136864 psmb4 other downstream 617758 18385289 ~ 18388306 (+)

Expression


Co-expression Network