G136848


Basic Information

Item Value
gene id G136848
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18295215 ~ 18317076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172043
CTGGTTtagaatttcattttatttattcatttgttttgttacaaaacTTTAATAACATTCACAGACACCATATTAAGACATAGCCCACCCCACAAGACAATTTGTAAGCAAACACCCATACACAGCAATCGAACCACACGAAACGAAAACGCGGCGTTCCACTCAGACGGGTCTTGGTTTGTACAGTTGTGTGCGTGCATTTATTGTGCCGTTGTGTGAAAGTGTAAATGTGGGAGCTCTCGAAGGCGtcgttgttgttattttacaatAGAATCAGAAAGCAACCACGGAAAACAGGAAGGCTCAGGTGTGAAACTCTCCCGGGCGCGTCTCTCTTCCACCGTGACCCCAAACCTCCGTCTGTTTCGCTGCcgcttcagtgagacttaacaGAGCTGTGGGGTTTCTGGAATCGTGTGGCCCGCTGCAGGTGTGCTCCCCTCTCCCCCGGCTCACGAGATACCGAGAGAAATTGGcgcacaaaaacaaaccagagaACGTGGAAGTGTAGGGAACGTACAGTTTCTCCACTTCCTCCCTGCGGTATCCACACCGGCCGTGGGAGAACTGAAAACCACCAACCAGCCCGGGGGCGATCTGTCTGCAGGAGAGAAGCCGAGAAAACGAAAGCGAGCAGCCTCGTTTTCCACGGCGCTTTCTGCGGCAGTCCCATTTGTCGGACTTCCCGATTCTTGCCGTCACGTTGCtcattccacacacacacacacacacacctatataccCTCATCTCAGTCTAGTGTTGCGGTGGGGGGCACAGCAGGTCAAGCGAGGGCCAGGAAGCTGCCCAGGATTTCCCAGAATTCCCAGGATTGCTCTCGCCCTGCTGTTGGCACTGTGGGCCGGTTGGCGTTGTGTAGCTGGCGGTTAAAGGGCAGTCGAGTCAAATCAGATCAGGAGATTCACGCAGCCACATCGTGCCAGGGAAATCAATAAAGTGGAAACCAGCCTGGTGTGGGCCAGAGTGGGTGATCTGGGAGCCTTATAGGTGCTGGGTGGGAATGTGTGCTTGTGTCCTGCGAGACAACCTGCCAAGACCGGAGCAGACAGCCGAGTTCCAGTCTTGGCAGGGGCAGAGGGGCGGGAGGGTGGAAGAAACGGGATGTGATGTCATCGATCCCGGCTCAGCGCCTGCTGGGGGGCCGCCCCGACCCCTGCGGCCGCTCGGACagaagcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172043 True 1198 lncRNA 0.54 2 18295215 18317076

Neighbor

gene id symbol gene type direction distance location
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 58027 18229745 ~ 18237188 (+)
AMCG00012431 NA coding upstream 115398 18174010 ~ 18179817 (+)
AMCG00012432 NA coding upstream 125471 18162576 ~ 18169744 (+)
AMCG00012429 NA coding upstream 288441 18002639 ~ 18006774 (+)
AMCG00012428 NA coding upstream 353653 17937937 ~ 17941562 (+)
AMCG00012447 NA coding downstream 12848 18329924 ~ 18350901 (+)
AMCG00012446 NA coding downstream 35935 18353011 ~ 18375993 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding downstream 72755 18389831 ~ 18401677 (+)
AMCG00012451 LOC101076171,LOC102795628 coding downstream 85229 18402305 ~ 18414912 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding downstream 99887 18416963 ~ 18442351 (+)
G136842 NA non-coding upstream 25708 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 393559 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 631045 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 646108 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 659254 17623113 ~ 17635961 (+)
G136866 NA non-coding downstream 116494 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 156157 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 298822 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 585436 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 615348 18932424 ~ 18933248 (+)
AMCG00012439 NA other upstream 160834 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 391405 17902832 ~ 17903810 (+)
G136658 NA other upstream 451294 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 499971 17792251 ~ 17795244 (+)
G136641 NA other upstream 527684 17764145 ~ 17767531 (+)
G136864 psmb4 other downstream 68213 18385289 ~ 18388306 (+)
AMCG00012460 NA other downstream 222469 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 730421 19047497 ~ 19053829 (+)
G137083 NA other downstream 852672 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 920613 19237689 ~ 19238958 (+)

Expression


Co-expression Network