G136866


Basic Information

Item Value
gene id G136866
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18433570 ~ 18470784 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172069
GCAGTGTGCTCCGTTTACACAAGGGGCATTTTCCCCACACTCTGCGAAGGATGCTCTGCACCCAGGGAGGGAGGAATTCAAAACCATGTTGTCCTGCTTTTGTCACAAGGGGTGATCTGTCAGTGTCCTCTCAAGCTTTGTATGCACTCGGCATCCCTGCGTTAATATCCAGGCCCCTTTCCAAAAGTACAGTTTGTaaagcattatattttatttaatctttttaacaattctatgtgtaaaacaaaaaataggaaaaggaacatatatattttttaaaccatagGTAGGAATTTTTGCTAAGTCCTTATACCTAACAAACCAGGAGAACGAGCTTCAGTTTGTTCAGTCTCAAACTGCCGCATAGATGTGTGACACAGAAGAAGCTTTGTCTCTTCAGAAGCAACGTCTGCCCTCGTCTCCCTCCCGCCCTGGCTGATTCCGCGTGATCCTCCACTGAGCCGGCTTTGTTCTCccggaggagagaagaaaatggTGGCGGTTTTCCTTTGTCAGGTCTCAGGCAATAAGTATTTCTCCCCCCAGAGGAAAAGTATCTTGCACTGAGATGGATCTGCACTCGGAGAGATCCCACTCGACCCCATTGGCCAGGAAAACACGCGAGAGGTTCGATCTGTGGATTCTGGATAACCGGGAATAAAGAGTTTGACTCCTCAGGAAAGCGTGTTTTCATTGGCAGTGGGTTCTTAACCTGTGGCACACATCGACTCCCTGCACTTCCTTGACGGACAAACCCAGCTCACCATACAGACGCACCCTGTGGCTTGTAACCTTAAAAATATCACTGCACGTTTTTTAAAGCGAAGATCTGACAATCCGGTTTGTAGTTGCCAAACACTGGACTCTTCCGGTACGAAACCAGCACCCCCGTTAGTGGGCGGAAAATGCGGAAATCGGTTACCATTTTACCAGAGTATCTGATTTCTCGTGCCAAGGCTTCACCATACAGCACTGCCCGTGACACGGAGTTAGTTGGTTAAACGCGAGGCCTTTAACGTGAAAGCGTCGCCAAAGACTTCAAACCCTGTCAGGCCGTAACCTCAAGACTTTCTTCGTTTTGGTTCTTTCCGAATGCCGTGTTGGGAGCGGGAGCACGTGATGGTTTACCCATACGTGACCTGGTATGAACCCACACGCCTAAACTTAAAAAGGCGATGTATGAATTCGAATTGAAAGCTCTTTTCGGTTACTTTTCCAGTTCTTGTACTTccatacttttttaaatgttacttttctACCACCTGCACTTGATCCATTCTCCAGCCTAATAAACCTCTTGCCAGTTAGTGTAAATCCACTgtgcaaaaatgaaaaccattttaattgtgatttttaaatgatttttaaataaacctgaaataaacacacacacttaaccGTTTTCATTTTCCAAGTTTTATTGAgctgacaaaattaaatacaaagcagTCTGTGCATGGGTGAACACGCATGGTGTCGGGTTTGTctagtgttgtgtgtgttaagccccgccccctcctagtgtatgtatgtttaagaacaaaataagtATTCTGAAGCATTACGGGTGTGCACTTTTCAGTAGATCTCAATGTGGGGGTTGCCAGGTGACTATGCCTCTGAAGTCTTGCCATATTATTGACTATGATGTCATATAATCAACCCCCCAATTTACTCAATGGACCCTGCTGGTGAACATTACACTTAACAATCCCCTGGAACAATTTCTGCCCTCAGCCCGAATCCCTGCCCCAGCGTGCAGTGGGAGGAGGGCTGCGCCTCCCCTTTTGGGGGGCTAAACCTTTCGTTGGCCACAAGCAGCGGCTACCCTCGTCCAGTTAGAAACACTAGACTTCGCTGGATTGACCTCTAACCTCAGAACCTTTTATTTaactgatttgatttaaaagaaGTTTAACTAAGAAAATGTTTGAGAATTCGAGGATGTTATTTCCCTACCCCCCCAAcggttttaaaatgatttcagaaAAGCTTCAATTAGAGAGAGCGGGGCCTAAAGATGTCCAAGGTGCCCCAACCAAGATCCTTGGCACAGTTCTGAACGTTTTCCCCCCAAATCTGCCCCTTTGAGCTCGAACGTGTTCAGGTAGTTTGTGATTTTATGTAACAATTGGACGTTTTCACACTGAACGCAGCTCAGGCGGGCTACTGAGAGATCNNNNNNNNNNGGAACCTGGGGATTGAAACCTTTCTTTGGCCGCGTCTTGAAGACTGATGATTTAAAGATCGGTATTGGAGGTCACTGCGACTCGACCCATTTCCAGGCAAGGCAAGTGGACTGTGGGGCAGCACTGTGGGGACGGAGGACACCGTGGGCTCCCCTGCCAGTGAGGGGCCGatcactctctctccttccctcacTGTCTATAGGTcatctctctccccttccctccctctctctctctctctcttcccactTCCCTCTCCATCTGTAGGTCATCTCTCtacccttccctccctctctctctctctctctcccccattcCCTCTCCGTCTGTAGGtcatctctctcttcctccatgCCACAGAGCCAACTCCTAAAGCTTTTGGGGGCAGGGGTCAAGGTTTGcatggggcgggggggtggtAGCAGGCACGCTACAATATGGCACAGTCCGAGTCTTCCTTCTTCTCGGCGCGTCTTCTCTCCCCGGCCTGTCTGCCCGCCGCCTGGCCCCTCACCTGGAAAAGGAAGGATGGGGTTAAATCGGAGCCGGAGAGGGGTATGTGGCGATCGCGGCCTGAGACCTAGTCCGGTGTGAGTTTGTGTGCTGTACCTGCTGCGTGGGTGGCGTGGGCTGGGGCTGctgttcctgctgctgctggtacTCCTCCTGCTGCAGCTGCCTGGCCAGCTCCAAATCGCTGAGGGGGGAGACGCcctgctgctgcagagacaTCGCCACCAGGTAGTCCTGAGGGA
>TU172070
tttttttcaagTTTTATTGAgctgacaaaattaaatacaaagcagTCTGTGCATGGGTGAACACGCATGGTGTCGGGTTTGTctagtgttgtgtgtgttaagccccgccccctcctagtgtatgtatgtttaagaacaaaataagtATTCTGAAGCATTACGGGTGTGCACTTTTCAGTAGATCTCAATGTGGGGGTTGCCAGGTGACTATGCCTCTGAAGTCTTGCCATATTATTGACTATGATGTCATATAATCAACCCCCCAATTTACTCAATGGACCCTGCTGGTGAACATTACACTTAACAATCCCCTGGAACAATTTCTGCCCTCAGCCCGAATCCCTGCCCCAGCGTGCAGTGGGAGGAGGGCTGCGCCTCCCCTTTTGGGGGGCTAAACCTTTCGTTGGCCACAAGCAGCGGCTACCCTCGTCCAGTTAGAAACACTAGACTTCGCTGGATTGACCTCTAACCTCAGAACCTTTTATTTaactgatttgatttaaaagaaGTTTAACTAAGAAAATGTTTGAGAATTCGAGGATGTTATTTCCCTACCCCCCCAAcggttttaaaatgatttcagaaAAGCTTCAATTAGAGAGAGCGGGGCCTAAAGATGTCCAAGGTGCCCCAACCAAGATCCTTGGCACAGTTCTGAACGTTTTCCCCCCAAATCTGCCCCTTTGAGCTCGAACGTGTTCAGGTAGTTTGTGATTTTATGTAACAATTGGACGTTTTCACACTGAACGCAGCTCAGGCGGGCTACTGAGAGATCNNNNNNNNNNGGAACCTGGGGATTGAAACCTTTCTTTGGCCGCGTCTTGAAGACTGATGATTTAAAGATCGGTATTGGAGGTCACTGCGACTCGACCCATTTCCAGGCAAGGCAAGTGGACTGTGGGGCAGCACTGTGGGGACGGAGGACACCGTGGGCTCCCCTGCCAGTGAGGGGCCGatcactctctctccttccctcacTGTCTATAGGTcatctctctccccttccctccctctctctctctctctcttcccactTCCCTCTCCATCTGTAGGtcatctctctcttcctccatgCCACAGAGCCAACTCCTAAAGCTTTTGGGGGCAGGGGTCAAGGTTTGcatggggcgggggggtggtAGCAGGCACGCTACAATATGGCACAGTCCGAGTCTTCCTTCTTCTCGGCGCGTCTTCTCTCCCCGGCCTGTCTGCCCGCCGCCTGGCCCCTCACCTGGAAAAGGAAGGATGGGGTTAAATCGGAGCCGGAGAGGGGTATGTGGCGATCGCGGCCTGAGACCTAGTCCGGTGTGAGTTTGTGTGCTGTACCTGCTGCGTGGGTGGCGTGGGCTGGGGCTGctgttcctgctgctgctggtacTCCTCCTGCTGCAGCTGCCTGGCCAGCTCCAAATCGCTGAGGGGGGAGACGCcctgctgctgcagagacaTCGCCACCAGGTAGTCCTGAGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172069 True 2944 lncRNA 0.49 2 18467806 18470784
TU172070 False 1475 lncRNA 0.52 3 18433570 18470784

Neighbor

gene id symbol gene type direction distance location
AMCG00012451 LOC101076171,LOC102795628 coding upstream 18658 18402305 ~ 18414912 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding upstream 31893 18389831 ~ 18401677 (+)
AMCG00012446 NA coding upstream 57577 18353011 ~ 18375993 (+)
AMCG00012447 NA coding upstream 82669 18329924 ~ 18350901 (+)
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 196382 18229745 ~ 18237188 (+)
AMCG00012457 NA coding downstream 5927 18476711 ~ 18491471 (+)
AMCG00012456 NA coding downstream 22800 18493584 ~ 18512606 (+)
AMCG00012458 NA coding downstream 74794 18545578 ~ 18552814 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding downstream 425630 18896414 ~ 18908734 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding downstream 444434 18915218 ~ 18925049 (+)
G136848 NA non-coding upstream 116494 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 164063 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 531914 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 769400 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 784463 17648628 ~ 17649107 (+)
G136873 NA non-coding downstream 2449 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 145114 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 431728 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 461640 18932424 ~ 18933248 (+)
G137031 NA non-coding downstream 493750 18964534 ~ 18972066 (+)
G136864 psmb4 other upstream 45264 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 299189 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 529760 17902832 ~ 17903810 (+)
G136658 NA other upstream 589649 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 638326 17792251 ~ 17795244 (+)
AMCG00012460 NA other downstream 68761 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 576713 19047497 ~ 19053829 (+)
G137083 NA other downstream 698964 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 766905 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 861544 19332328 ~ 19350202 (+)

Expression


Co-expression Network