G136951


Basic Information

Item Value
gene id G136951
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18544918 ~ 18546313 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172164
GCCTCCGATCGCCGGCAACCGGCCGCCGAGACCGCGGTTTAAACGCACGGCAGGACAGGAAACTGCCTTTAATATTTAGCGGCCGATGTTCCGGGGGAAGTCGGATCTGAAATTGCAATTTAAACACACGGAGAAAAAACTACTTCCACATCCGGTCGGCCATAACAATCGTGGTTTGAAAAAGTCAGCCGCGCCGCCCAGCGGCGCAAAGATGGCGGCTGAGCGACACCGGAAGTGGAAACTGAGACAGAAAGGCCCTCCCGTGCAGGGCGGATGGATACCGCGGGGGGCACAATTTAAAGGTTTCCCCCGACTTGGGCTGCTCAcctcttttttttggggggggggagaagggGTCAGATGACTGGGCTTATGTTGTGTGCTGAAAATGGCGGATCCAAAGGGCAGTGCGGCTCTGTCGGTGCAGCCTGTTCCCTTTATTGCGTTTGAGTGTTGGCTAACGGCACTATATGTCACGGTGGAGGGGGCTGTATGAAATGGGCGGCTGTTCCGCGCTGCGCAGTGTAGTTCCGGCATAGctttggtttttcttttttggcggcaaaaaaagttttgaaacgCCTGCTTTGTCTGCACTGTAGCTGATTAAATCACCATGAAGTCCAGTTGGAAATGATTTTGCAGTTATTGTTGTCATGTATTGAAATGTGCAAGCTGTGCAGCACTAGCTGTGGACTCCTGTTTAGGCTTGGTAGTTTAATTAGCAGTATAATAGCAACACACTGAAAAAAGGATTAGGGTAGCTTTATAACACACTTTAGATCAGGGGGGACAGACTCCAGTCCTGTCTTTCTGGTTTTGCTCCAGCCCAGCTCTgatccttaattggtctaatta
>TU172165
CTTAATACACAATTCAACCGGGTGCAAGTGCGACTCAAAACGGGGGGAAATCGCGgaaactgatatatatatatataaatacaatcgATAACTTTCTAAATATTGTTTAGCTGCTTCCCCCCCAGGCCCAGGCGTTGCACTCACCGCGGCGGCTCGGCGGAGGAGAGGCCGCGGCGCAAAGATGGCGGCTGAGCGACACCGGAAGTGGAAACTGAGACAGAAAGGCCCTCCCGTGCAGGGCGGATGGATACCGCGGGGGGCACAATTTAAAGGTTTCCCCCGACTTGGGCTGCTCAcctcttttttttggggggggggagaagggGTCAGATGACTGGGCTTATGTTGTGTGCTGAAAATGGCGGATCCAAAGGGCAGTGCGGCTCTGTCGGTGCAGCCTGTTCCCTTTATTGCGTTTGAGTGTTGGCTAACGGCACTATATGTCACGGTGGAGGGGGCTGTATGAAATGGGCGGCTGTTCCGCGCTGCGCAGTGTAGTTCCGGCATAGctttggtttttcttttttggcggcaaaaaaagttttgaaacgCCTGCTTTGTCTGCACTGTAGCTGATTAAATCACCATGAAGTCCAGTTGGAAATGATTTTGCAGTTATTGTTGTCATGTATTGAAATGTGCAAGCTGTGCAGCACTAGCTGTGGACTCCTGTTTAGGCTTGGTAGTTTAATTAGCAGTATAATAGCAACACACTGAAAAAAGGATTAGGGTAGCTTTATAACACACTTTAGATCAGGGGGGACAGACTCCAGTCCTGTCTTTCTGGTTTTGCTCCAGCCCAGCTCTgatccttaattggtctaatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172164 True 858 lncRNA 0.51 2 18544918 18546313
TU172165 False 828 lncRNA 0.50 2 18544918 18545856

Neighbor

gene id symbol gene type direction distance location
AMCG00012455 fam63a coding downstream 68770 18469995 ~ 18476148 (-)
AMCG00012450 psmb4 coding downstream 156689 18383678 ~ 18388229 (-)
AMCG00012449 NA coding downstream 218035 18323005 ~ 18326883 (-)
AMCG00012448 vps45,LOC106588336 coding downstream 223945 18295215 ~ 18320973 (-)
AMCG00012441 NA coding downstream 267314 18261865 ~ 18277604 (-)
AMCG00012461 NA coding upstream 22536 18568849 ~ 18569085 (-)
AMCG00012463 NA coding upstream 48888 18595201 ~ 18601943 (-)
AMCG00012462 NA coding upstream 69600 18615913 ~ 18651892 (-)
AMCG00012469 NA coding upstream 393659 18939972 ~ 18954308 (-)
AMCG00012468 NA coding upstream 413503 18959816 ~ 18967559 (-)
G136915 NA non-coding downstream 51013 18420009 ~ 18493905 (-)
G136906 NA non-coding downstream 102331 18439579 ~ 18442587 (-)
G136826 NA non-coding downstream 365231 18140751 ~ 18179687 (-)
G136820 NA non-coding downstream 432015 18112676 ~ 18112903 (-)
G136746 NA non-coding downstream 573065 17912238 ~ 17971853 (-)
G136955 NA non-coding upstream 6694 18553007 ~ 18556113 (-)
G136968 NA non-coding upstream 67726 18614039 ~ 18614257 (-)
G136997 NA non-coding upstream 240643 18786956 ~ 18787155 (-)
G137008 NA non-coding upstream 356160 18902473 ~ 18902838 (-)
G137014 NA non-coding upstream 379232 18925545 ~ 18926343 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other downstream 7793 18516836 ~ 18537125 (-)
G136900 NA other downstream 166621 18375330 ~ 18378297 (-)
G136837 NA other downstream 307662 18205375 ~ 18237256 (-)
AMCG00012437 LOC106580258 other downstream 442589 18098177 ~ 18102329 (-)
AMCG00012414 NA other downstream 765796 17767410 ~ 17779122 (-)
AMCG00012467 NA other upstream 381066 18927379 ~ 18933201 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other upstream 486290 19032603 ~ 19043449 (-)
G137199 NA other upstream 895614 19441927 ~ 19507394 (-)
G137246 NA other upstream 1167849 19714162 ~ 19793531 (-)
AMCG00012503 NA other upstream 1356793 19903106 ~ 19910378 (-)

Expression


Co-expression Network