G137027


Basic Information

Item Value
gene id G137027
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19020158 ~ 19026005 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172255
TCTtctaataaacatttaatacaaaaataatctttacATATAATCTATACaataagttaaaaaacaaaaaattaagacAGTCAAGCAACACTCCCAACGCAGCTTGCACGTCATTCTCCGCTCCTTCTCAGAGTTCGGGCTCCATTGGGGCCGGATCTTCAATACTGGCGGCTTGGTGTTACATTCACTCTAAGGTCCTCTATAGCTGCAAAGAGTTCACGATCTAAATGTACAGGTTCCTTTTATCAAAAGTGAGAATCTTTCGCCTCAAACTGTagtgataaagaaaaaaaaaaaaaaaaaaaaagaaaccgactaaactgtaaatcaggaagcaaaacaaaacctaagaAGTCCTGGATTGGCAAACTCAAAGCCACACCATCCAAAACacgcaaaagaaaaaaaaaaaaaacaacaaagcccTCACACTGTTCTCTCTGATCAGCACAATCTTTTGTTAGCGGTTgtccccctccaaaaaaaataaaaattaaatttcGGGGGGACATGCGTTGAAACCGCTAGCGACAGGGATAGGTTGGCCGTCGTGGGAGGAGCACCGTTGCCCGCCTCTCCTGCTCAGATGAAGCTCTGTGGCAGTTTTCATCGGCGCAGAAGAGGACGGGAATTTcgttggagaaaataaaataaaaacacagcgtCCCTGGCTCGGACTTCCTTTCATCTGATCAAGTAGGCCAGGCTGGCGCCAATTCCCGCCACACCGGCGAAGGCCATCAAAGCTGTTCGGATGGTGGACTCGGGGTCCTCCACGTGGAAGAACTCTACGAAACCCTCCACGACTTGTTGTTGAGCAGCCACTCGCGCTGGTCCGCAAGCAGGTAGGACGAGATCTCTTCAGCCACCGCCTCCACACACTGCTCCCGGCCGTCGGCCTGCAGGTGCTTGGACACCACCGCCCCGAAGGCGATCAAACTGGCAATGCGGCCCCAGTTGGCAGCAGTGTGAAAGAGTGGCTTTCAAAACGCAACACATTGCTAGGGACTGATAAGGGGAAGAGCAACTGCGTCCTGGCCATTTCCGAGAATGCTGCCGAGAGGGGGCCGGGTTGCAGTTTCTCAGAACTGCATCCTGTGGTTCAGGAGGTTAACGCATCCACACAGCCTCAGAGCGACAATTAGCACTGTGTCCGATTCACAGAGCCCGAGGATGCTTATGCACACCGCGATGGTGCGGATTCGGACCCCGGCCGAGTTCTAGAGAAATGGCACAGATGGCAAGACAACAGCTCCAGGGGGCAAAGTGTAGCTTACGAGATCAAAGACGCTCTTGTTAGCGACTGTAGGGGGTGGAAGCAGTGCGTAGGCGGCCGAAGCTCAGAGGTATCAGGTATTTTAATGGCAGTAGGTGTCTGGAATCCTACGCCTCCAGTGCGTTGAACCCTTTACACTCACCACCACACAAACACCACAAGGCGATCATGCATATAATGACTAACAATGATTGCTCAAACAGTGAACAGGAATAAAACTATACACTTCCTAAACCTTTTACTCCAGAGACTCAATACTCAAGCAAAAACCTAAATGATCACACGTATACaagagtttatttttacttgtgCAAGACTGCGGTTTCAGGTTTGGCAAAGACGCCTGAGAATCGAGAAGTGGCTCCACGGGTTCTCCGGTGTGCAACGGGGCAAATCTGAGTCAGACACGGAGGCAGGATTGGATTACTCCACCTTGGAAACCGACCCAGTGTGGGATTACTCAATCCCACAACGGCTATTGTACATTAGGGTTTCTGTGGGATTGATTCAAGGCCGAGTGAGTCACAATCACATAGCTCAGATTCCTGCATTACCCAAATTAGACCTTGAATGAGGCCCCTGATCATACATTAACCCCTTAAAAGGCTCAGATGTGGCGGTTTTGGTCTTCTATGAAGAATATTCTCGCTTCTAAGAAGGAGGAGGTGAAGTGACACCCGAGTCTAATGACGTCAAAAAAAGCCCATATCAGCAGACTTTCAACACTGATCTAGATATCGATGAGGCATGCTTGTGTAATCAAAAGAACAAAATCCCCATTGATGCACATCTTTCAACAACTGCATGCACAAAGGGGTTTgtcgattttattttttggtctaTCCCAGCTACTTTAAGCATCAGAATCCAAATACACCCACTGGATCATTGTGCATGAATGCAATGAATAAAACTAGTGTATTTTGGGTTGCTCTCCACCAGTGACAGATTCGCATCTTTGCACGACCTCTGGGGGGAACTGCAACCTGAATCTTCACAAATGCAAGATCTGGGAATAATGCAACAGAGCAAAACACAGCGATCAAGAGCAACAAGTGCATGACATGCAAGCCAGAACGCCTCGGTTTCTGGAATGGGCACACCCGTTTCAGCGCTGGGCGACATCAATGACATCTTTTGTTATATTCTCTCCATTGTTCCctttcaaaagcaaacaatgttTTGGCCCGAGGAATGAACCAGTAGGGCCATTCAACACATACCAAAAAACGGCCACACAGGGCTTAACAAACCCAGGAGATCAGAAACCCTGCCTTCTTTTCAgaggatacattttattttttggctgaCAGGTCTCTACCACAGCTGGACAGTTTGCTCCAGAAGGTTCGGGGCAATTCTGCAGCAATGCAAACCAGAGAGATCCAGGAACACACTAATCCCAGGTCCCAGTGATTCGCACCCCAGCTCTATTTGTATACAGCAGATCCACTTTGATGGATCCAGTCAAACAGGTTTGCCCCCATTTAGACTGGGTGGGAtatgtacatataaacaaaGCCCTTTTCCATGTGCACTTTACTGCTACTACAATTGGTGCAAAGGTGGCAGATCTGGGAGCCCATCTGCGCTGCGGAACAGGGCGACCCTCGCTTTTCTCACACAAAGCCCCGGATGTGACGCGCTTCCTTTGTGTGCATTACAGGGCGACCCCCACGTTGTTGCCCCCCCACTAGAATTGCCCTCTCAGTCCATTTCCCGAAAGGCCATCTGACCACACACCATCAGGAAAATCATCTAATCACTCCTCTCATCTCATCGCCTCCGCCAGCAGAGCAGCTCAACGCGGAAACTCCTATTCGAGGAAATAAAATACGGCATCAACACGTCATGGAAAAGAACCGAACCGCACTAAACACACAACACCTATTCATCTGCATGGGATCGTTTTTATGATTAATAAGAGAAATAGCAAACCATTCTctaaaaaacagttaaaatggCTACTGTACCACCAAGTCATTACACTAACACaatccatgtgtgtgtgtgagtataatCTGTGTGTATAATctaaatataggcctacattatAATCtgttgtgtgtatattatatacatgcacattatataggctagcctatacacacatacacacacacctgtacaacacttttttattattttatttttctaatccaTGTACAATATATACGAATAGATCGGTGGATACGCACGCAAAAGCGTTTTGTAATATGTGAAGAAAAAGTTAGGCCCAAATGCAAAGCCCCGACCTCTAGTTTATACCAGCGCCGCACAAGGAACACCGACATCGACTTACCGTTATACGCATACTGATGCTTCTCGATCACCGACTCCACCACCCGCGTAAGGGTGGCTAAAGCCTTGTTCCTGCCCCGTCCACAGCTGCGAGATAGTCCACAGTACATCCCCAAAAACCCGTGAATAAGTTCCCGTGTCTCCCGGTCCAGCTGCCCTGAGGACTCCGCGGTGAAGCCGTTCATATTCCCGCAGTCTGTGGTCGGCGTGTCGGGCGAGGAGGGCAGCGAGCCGTCGTCGTTGCTGCTCTCCGGGAAGCGCGTCTCCAAAGCCAGGCCTTTGAACGCCTTGCGGGGCTGCTTGGAGACCCGGGCGGCGACGGCGGCATCCACCTCGTCCACCCAGTTATCCAGCTCCTCCTCGGCGGGGTTTGGGGGCCTCAGCATCGGCGTCTCCACCGCCCCGGTCGGCGTCTCCAGCGAGTGCGCCCTGTATCCGTCCGGGGTGCCTCCATTTTGCGCGCTGGGGTAGCACAAATGCACCACCAGGTTGGCCGACGAGCGCTTAAAGGTTGAGGAGAGAGGATCCATCTTGTCTGGTACGGTGCTGGCTGTGGGTGCGAGAAAGTAAATGGTGCTAAATGCCTGTGTGCGGTAACTTATGCTGCTGTGACCCGTCTCTAAAGCGCTCTTTCCCCCAGTCAGGGCTTTATATGCGATCCGCCCATTCCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172255 True 4251 lncRNA 0.49 3 19020158 19026005

Neighbor

gene id symbol gene type direction distance location
AMCG00012465 LOC107732464 coding upstream 82680 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 95109 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 111424 18896414 ~ 18908734 (+)
AMCG00012458 NA coding upstream 467344 18545578 ~ 18552814 (+)
AMCG00012456 NA coding upstream 507552 18493584 ~ 18512606 (+)
AMCG00012470 NA coding downstream 28635 19054640 ~ 19065913 (+)
AMCG00012474 onecut1,LOC107746960 coding downstream 74314 19100319 ~ 19109503 (+)
AMCG00012476 NA coding downstream 245305 19271310 ~ 19273160 (+)
AMCG00012479 NA coding downstream 251711 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 274808 19300813 ~ 19333427 (+)
G137031 NA non-coding upstream 48092 18964534 ~ 18972066 (+)
G137016 NA non-coding upstream 86910 18932424 ~ 18933248 (+)
G137007 NA non-coding upstream 117287 18902512 ~ 18902871 (+)
G136969 NA non-coding upstream 366560 18615898 ~ 18653598 (+)
G136873 NA non-coding upstream 545242 18473233 ~ 18474916 (+)
G137074 NA non-coding downstream 86765 19112770 ~ 19114862 (+)
G137079 NA non-coding downstream 99836 19125841 ~ 19126313 (+)
G137080 NA non-coding downstream 113120 19139125 ~ 19161143 (+)
G137110 NA non-coding downstream 208405 19234410 ~ 19236788 (+)
G137130 NA non-coding downstream 296001 19322006 ~ 19322259 (+)
AMCG00012460 NA other upstream 475668 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 631852 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 885777 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 1116348 17902832 ~ 17903810 (+)
G136658 NA other upstream 1176237 17840933 ~ 17843921 (+)
AMCG00012471 NA other downstream 21492 19047497 ~ 19053829 (+)
G137083 NA other downstream 143743 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 211684 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 306323 19332328 ~ 19350202 (+)
G137252 NA other downstream 788920 19814925 ~ 19815617 (+)

Expression


Co-expression Network