G137155


Basic Information

Item Value
gene id G137155
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19423553 ~ 19425538 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172428
ACTGCAACAGTATTTCACCATAGTCGGGTAGAAATTAGTGACGTTCACTGCTGGAGAATGGAGTCAGACACAGAACAGACAAACACTGATGTCTAACTGCTGTGCCGGACAAAGATCTGCTCTGATCAGCTGCTTCAGACTCCTGTCACTCAGCAAACTGAATGGGCAGCTGACCAGTGTTTCTGATGTGATCACaagacaaaatgaaagcatGTCTTCTAACATGCACCAGAAAAACTGTGGCAAACATATGaccaaaaaacatgtttacattacattttgcaagGTTTAACTTTCTTTTGGTAGTTATTAAACATGTTCACAATCTGAGCTAATGAAAATTAGCATGGACAACTGGAGTAGTGACTActttctggtttgttttgccttttgtttCTCTATACAAAtctatagaaaaaaaaatctgggggGGAGAATCGATATTTTGTCATCCATAAATTACCCCCACCACGTCATACAGGGTTCATACcgcttttcaaaagtcaaattcaagcacttttcaaGCACTTTCAAGGTGCACTGTCACAGCTTTTCCAGCACCTCGCAGCCTTGGTAAACTAAACCGTCTCATCTAAAATGCACACtcttctgcactgcactgcacacacacacacacaaacacacacacacgacgcTGATGTGCACATACATGACTGCGCACAGAAAGAGGAATTGTCATACCATCAAACACATGCCTACAGTGGCCATTCACGTCTAGAAATTATGGAAAATTCCCTGCCGTTCACCTTTGGCATAACTCGACAGCGCAGACTCTCCCACAGTGAATCTTTTTTTGCAAACCTCACAATGCTGTCCTTCCTAAAGAGTGTGCATGAGCAATTAACAATTTCATAACACCTATAAATCTGGGCTAGCGGCGGGTAGCTGCTCTTGATTGGGCGGTCAGTGTGTCGGTTAATCTGACCATTTGAGCTGCCTTTCAGGATGGGCTGCTTTCTGAAATCGCGCCTGCGTAGTGACCCCATACACGCTGTTAAATCCGAGCTGCTATTGATGGCAACTCTTCAATATACCACAGACTTCCTTATATAACATAATTAACTTTTGAATATCCTTAAATGTGACTATCACTGGAATAAGGagaaaacagtgcagtgcaaaCCCCGCTGCCCGTTGCATTTAAGCAACCTCTCCCTGCTAATTCAGACCGGGCAAAAGCAAGGACTAAAGCCATAGGTGTTTTCATTGCGACGGATCTGCGACCATACTCAGTTGGTTGAAAGTTTATTTGAGAACCTTCAGATGCACTTTAAGTTTTGTTAGTAGTTTGCAGCAATATTAActgacttttttaaataatacctaGACCCATAGGTGCTGAGTTTTGAAATTCCCGGGGGGGGGAATTCTATGCAGGAAAACTTATCAACGCAAATAACTGGGACTATTGTAATTACTGCAGTATAAAAGACAATCTAATTGGAATCAcgtgtttggttttatttttttccatgaatGATTAAGTAACTCATCAAAATTCCAGGGGGGGCTGAGCCCCCTGTTTACTGTTCGGCAGGCCTATGCCTAGACCTAatgtttttaagaaagaaagatatgTACCTTTATGTGCCTTCCTTTGTTCAGTGAATTATGGCCAATTAGCCACTGTTTACAAGTTTAtaacttcataataaataaaaatagatgttatgttttgcatgggttttttttttccactgtaccGAAATTGCACCGAACCGTGACTTAAAATCTGAGGTACGTACCGAACGGTGACGGTGTGTACCGTTGCACCCCTGCTGTCCACAAATGTGGACCTTGTTTTAACCATAGTTTAAATTCAATTTGATCGAGCCACCTCTCTTTAAAACGGCAACATTGCGGCACATTTGCCTCACTGGGTGCTGATGTGCGCTGTCTTAGCGGCTCAcactcataagaacataagaaagtttacaaacgagagggggccattcgacccatcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172428 True 1986 lncRNA 0.42 1 19423553 19425538

Neighbor

gene id symbol gene type direction distance location
AMCG00012481 NA coding upstream 90126 19300813 ~ 19333427 (+)
AMCG00012479 NA coding upstream 129457 19277716 ~ 19294096 (+)
AMCG00012476 NA coding upstream 150393 19271310 ~ 19273160 (+)
AMCG00012474 onecut1,LOC107746960 coding upstream 314050 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 357640 19054640 ~ 19065913 (+)
AMCG00012483 NA coding downstream 35753 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 50844 19476382 ~ 19483546 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding downstream 70909 19496447 ~ 19501256 (+)
AMCG00012487 hdgf coding downstream 93568 19519106 ~ 19523682 (+)
AMCG00012488 NA coding downstream 102934 19528472 ~ 19531808 (+)
G137144 NA non-coding upstream 27800 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 101294 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 186765 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 262410 19139125 ~ 19161143 (+)
G137079 NA non-coding upstream 297240 19125841 ~ 19126313 (+)
G137177 NA non-coding downstream 79345 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 234208 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 363449 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 739745 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 744888 20170426 ~ 20237873 (+)
AMCG00012480 NA other upstream 73351 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 184595 19237689 ~ 19238958 (+)
G137083 NA other upstream 249132 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 369724 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 879063 18539545 ~ 18544490 (+)
G137252 NA other downstream 389387 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 465629 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 821113 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 905543 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 975471 20401009 ~ 20422556 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G13359 NA non-coding NC_048565.1 CM023219.2 14633963 ~ 14635553 (+)
eurasian perch (Perca fluviatilis) G11789 NA non-coding NC_053112.1 CM020909.1 42559970 ~ 42560990 (+)
mexican tetra (Astyanax mexicanus) G249967 NA non-coding NW_019171372.1 APWO02000970.1 35107 ~ 35339 (+)