G137177


Basic Information

Item Value
gene id G137177
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19504883 ~ 19509198 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172454
GGGAGatttaagagtttttttttatttcacatcagTCATACATCaccaggatttaaaaataaaaaaatcccccaCTGATTTCGGTTATAGGGTCTGTTGCGTCACATTGGCAAAATTCTTTAACATCAATCTTTTGTGATCTTTTGCACAGAGCAGGTGAATGCTTATGTAATTGTTTGGTCTGGAGTGCTGGAGATTAGAACTTGATTTAGAATTGTGGATTTATATATTCCATGAATTGTAACATTCTGATGTGGGGGTTGGGATGCCAGCTAAACTAGAGTGGTCCCCAAacctgctcctggaggaccccctactctgctggtttttgttccaaccgagctctcaaatACTTAACTGAACCCTTAATTATACTAATAATTTCCTGAATCAGAGACTTTATTGTAAACAATAGGGGTTaaaagttaagtataaaacatgtataatgaACTTACCTTATCAAGGAACCAGATTTGTATCCgttacaaagtaaaataaatcaaaagggttcaattaagaaacGGAGAGCacgattggaaaaaaaaacagcagggtagggggtcctgcaggaccagggttgggaagcCCTGTTTCTTGGTTGCATCTCCACCGAAGCACAGATACTAGGGGGCTGCTCTGTGACTTTGCAAATGATCAGTCTGCcagcctcccctcccctcccccacccccacccaatCAGTTtccatgtttgtgtgtaaaccAGTGACGCTATGGGCATCACCTTCCAAAGGGAACATTGTCACGAGCTTAGGATTTTGTATAGTGAACCTCACTctgaactttttgtttttcaattaaattaagtatttgaaGCGACTCTTACTTCAGTAAAAGGCAGGACTGACCGATGCCCTGCAGTCTCCGTACTGAGAAGAAAGCATCCACTTCTACCTTTGAGGATAAACGGAGGTCCGGAAATCACTGACCCACTAAACTGAGGGAGACCCACTCAGTCTTGCCCTCCACTCCCACCCACTTGATTGGTAATACTTTATTAAAGGAGTGTGGCAGTGCTGGCGAGGGGAGCTAGTCACACAGTACAGTTCTCTATACATCTCAAGAATATTTACAGCACAGGCCAACAGGTGAAGTCACACCCCACGAGATCCAGTCTTGGCTAACTGCCCCCTTTAACTTCGAGATCCTCCCACTCTGATCCTGGAGAAAACCCTGGTGTGAGGGTCAGATTCAAACTCCTGTAACCGAGGTCAGATAAACGCAGTGGAATTGGCCCAAatggacaccgggtgacgcaaTGATGtaatcagcaaaaacaaaaaggtcaccAGGTTGAGGGGAGGTTTAGGTTTANN
>TU172456
GGGAGatttaagagtttttttttatttcacatcagTCATACATCaccaggatttaaaaataaaaaaatcccccaCTGATTTCGGTTATAGGGTCTGTTGCGTCACATTGGCAAAATTCTTTAACATCAATCTTTTGTGATCTTTTGCACAGAGCAGGTGAATGCTTATGTAATTGTTTGGTCTGGAGTGCTGGAGATTAGAACTTGATTTAGAATTGTGGATTTATATATTCCATGAATTGTAACATTCTGATGTGGGGGTTGGGATGCCAGCTAAACTAGAGTGGTCCCCAAacctgctcctggaggaccccctactctgctggtttttgttccaaccgagctctcaaatACTTAACTGAACCCTTAATTATACTAATAATTTCCTGAATCAGAGACTTTATTGTAAACAATAGGGGTTaaaagttaagtataaaacatgtataatgaACTTACCTTATCAAGGAACCAGATTTGTATCCgttacaaagtaaaataaatcaaaagggttcaattaagaaacGGAGAGCacgattggaaaaaaaaacagcagggtagggggtcctgcaggaccagggttgggaagcCctgtttcTTGGTTGCATCTCCACTGAAGCACAGAAACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172454 True 1334 lncRNA 0.44 2 19504883 19509198
TU172456 False 627 lncRNA 0.38 2 19504883 19508859

Neighbor

gene id symbol gene type direction distance location
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 3627 19496447 ~ 19501256 (+)
AMCG00012484 NA coding upstream 21337 19476382 ~ 19483546 (+)
AMCG00012483 NA coding upstream 37388 19461291 ~ 19467495 (+)
AMCG00012481 NA coding upstream 171456 19300813 ~ 19333427 (+)
AMCG00012479 NA coding upstream 210787 19277716 ~ 19294096 (+)
AMCG00012487 hdgf coding downstream 9908 19519106 ~ 19523682 (+)
AMCG00012488 NA coding downstream 19274 19528472 ~ 19531808 (+)
AMCG00012486 NA coding downstream 28348 19537546 ~ 19541766 (+)
AMCG00012493 bcan,LOC106569870 coding downstream 49456 19558654 ~ 19581439 (+)
AMCG00012492 NA coding downstream 108540 19617738 ~ 19627369 (+)
G137155 NA non-coding upstream 79345 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 109130 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 182624 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 268095 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 343740 19139125 ~ 19161143 (+)
G137196 NA non-coding downstream 150548 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 279789 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 656085 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 661228 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 692353 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 154681 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 265925 19237689 ~ 19238958 (+)
G137083 NA other upstream 330462 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 451054 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 960393 18539545 ~ 18544490 (+)
G137252 NA other downstream 305727 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 381969 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 737453 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 821883 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 891811 20401009 ~ 20422556 (+)

Expression


Co-expression Network