G137214


Basic Information

Item Value
gene id G137214
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19504884 ~ 19635067 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172504
agtatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagagagagagagagcttgtgACATCATTGTAAGAGTGTAGATGTTataatggcaatgggccagacacattgcaaatGGAGCAGACCAACgctggacaaaagaagctattgaatggatcccaagagataaaaaaacaacctaaaagattaaataagatgATTAGATGGTTTAAGACACATAATATCGCCTAACTTGGTAGACTGTAATTCGAAACTGAATGTCTGATCACTTACTGTCTGCTGGGTTGCAATGTGCCAGGAAGCTGTTTCAGAAAATTGAAATCACAGAAACTGTACCAACAAATCTTGTTTGTATAAAATTGGCATTGcctttgttctttaaaaaaaacaggcagaaCAGTATGATTGTCCACCTATGATTGTCTTTAACTCTTCTAGTGCAACTCTATGGAAAAACGAAATCATTAAGAAAACAGAGCTTCACAAATCAgtacaaaatgtaacatttaatgtCAAACACTTCACCTTGAGTGTGACAGGCGACAGGAAACTCAATAATTGCCACAGGACATGTTTCACAGTAAATCTGTATGACAAATACTTGCAGTCAGATACAGGCGTGGGTGCAATACGCTGTCTTGCTGGTTGGTGGTGTGTGGTTTTTGGAATTCTAAATGTCGTAACAGATAATTTATTTGACCGCTAAATCAGTAACACATTTCAAAGGGCTAATAAATGAGAGAGTCTGATATCACTGACCACAACATTGGCCATGCTGCTGGTCCAAAGATTGTATGTTTCCAGGTTGCCCCACAAACTGACCCAAAGTGACTACCTGATGAATCTAACAGCTTCCTATCACAGTCTACAGTAATGAAACAGTGGCCGGCTCATTAATTCGAGTGGACATCTGCCTACAAACATCACTTGCTAAGCCGTCTCCGAATCACCCAAGAACACAACACTGCCGTTGTCACCCGAAAAGGACCTTGGCTTGCAGGTGTATGTCTGTTCTGGGGTAGTCTTTAGCTGTAGCACTCTTATTAACCATTGTGTTACTGCTTTAGTGGGGTGTCTGAAGgcagttgttttttctgtctggACCAGAAGAAGGCTGTGAAGAATTCCAACAGGACGGTTGGATGATGGTAGGATGGTAGTGTGTATCGAATACTACAGTTGTGTTTGAGTCTGTGGAGAGTGATTTTATACAGGTGGGGAGAACAAGTGGACGGTTTGTGTTCTTCAGagtagtgtttgtgtgtgtgtgtgtgtgtgtgtgtaggtatgCAGCTATGTAACATTGATCATCAAAACCCTGATCCATTCCCAGGTCAAGCATTGAGCGCCTTCTCGACCTCCTCGGTTTGGATAGCGGTCATCTCTTCATGACCCTGATCTTCCTCTGGCACCTGCagcaaaaagacaaaagaaaacagcCCAAAGGGAAAATGATCTCTGGATACTGCCCGGTGCTTTCCATCTGGCAACGGTGATCCACTCGAAAGCAACAGGGCCAGTTGTGTACTGGTTTGGGGCTTT
>TU172507
NNTAAACCTAAACCTCCCCTCAACCTggtgacctttttgtttttgctgattaCATCAttgcgtcacccggtgtccatTTGGGCCAATTCCACTGCGTTTATCTGACCTCGGTTACAGGAGTTTGAATCTGACCCTCACACCAGGGTTTTCTCCAGGATCAGAGTGGGAGGATCTCGAAGTTAAAGGGGGCAGTTAGCCAAGACTGGATCTCGTGGGGTGTGACTTCACCTGTTGGCCTGTGCTGTAAATATTCTTGAGATGTATAGAGAACTGTACTGTGTGACTAGCTCCCCTCGCCAGCACTGCCACACTCCTTTAATAAAGTATTACCAATCAAGTGGGTGGGAGTGGAGGGCAAGACTGAGTGGGTCTCCCTCAGTTTAGTGGGTCAGTGATTTCCGGACCTCCGTTTATCCTCAAAGGTAGAAGTGGATGCTTTCTTCTCAGTACGGAGACTGCAGGGCATCGGTCAGTCCTGCCTTTTACTGAAGTAAGAGTCGCttcaaatacttaatttaattgaaaaacaaaaagttcagAGTGAGGTTCACTATACAAAATCCTAAGCTCGTGACAATGTTCCCTTTGGAAGGTGATGCCCATAGCGTCACTggtttacacacaaacatggaAACTGattgggtgggggtgggggaggggaggggaggctgGCAGACTGATCATTTGCAAAGTCACAGAGCAGCCCCCTAGTATCTGTGCTTCGGTGGAGATGCAACCAAGAAACAGGgcttcccaaccctggtcctgcaggaccccctaccctgctgtttttttttccaatcgtGCTCTCCgtttcttaattgaacccttttgatttattttactttgtaacGGATACAAATCTGGTTCCTTGATAAGGTAAGTtcattatacatgttttatacttaacttttAACCCCTATTGTTTACAATAAAGTCTCTGATTCAGGAAATTATTAGTATAATTAAGGGTTCAGTTAAGTatttgagagctcggttggaacaaaaaccagcagagtagggggtcctccaggagcaggtTTGGGGACCACTCTAGTTTAGCTGGCATCCCAACCCCCACATCAGAATGTTACAATTCATGGAATATATAAATCCACAATTCTAAATCAAGTTCTAATCTCCAGCACTCCAGACCAAACAATTACATAAGCATTCACCTGCTCTGTGCAAAAGATCACAAAAGATTGATGTTAAAGAATTTTGCCAATGTGACGCAACAGACCCTATAACCGAAATCAGtgggggatttttttatttttaaatcctggtGATGTATGActgatgtgaaataaaaaaaaactcttaaatCTCC

Function

NR:

description
hypothetical protein cypCar_00033690, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172504 True 1569 lncRNA 0.42 3 19626484 19635067
TU172507 False 1333 lncRNA 0.44 2 19504884 19509198

Neighbor

gene id symbol gene type direction distance location
AMCG00012485 NA coding downstream 87608 19415947 ~ 19417276 (-)
AMCG00012482 NA coding downstream 181671 19300495 ~ 19323213 (-)
AMCG00012477 NA coding downstream 253472 19207349 ~ 19251412 (-)
AMCG00012478 NA coding downstream 300142 19196597 ~ 19204742 (-)
AMCG00012475 NA coding downstream 384876 19116298 ~ 19120008 (-)
AMCG00012499 NA coding upstream 168559 19803626 ~ 19813830 (-)
AMCG00012498 ankrd34a,LOC106605449,LOC106580187 coding upstream 193433 19828500 ~ 19830155 (-)
AMCG00012500 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 256076 19891143 ~ 19895768 (-)
AMCG00012502 NA coding upstream 280745 19915812 ~ 19931090 (-)
AMCG00012501 NA coding upstream 299792 19934859 ~ 19947563 (-)
G137094 NA non-coding downstream 323526 19179139 ~ 19181358 (-)
G137014 NA non-coding downstream 578541 18925545 ~ 18926343 (-)
G137008 NA non-coding downstream 602046 18902473 ~ 18902838 (-)
G136997 NA non-coding downstream 717729 18786956 ~ 18787155 (-)
G136968 NA non-coding downstream 890627 18614039 ~ 18614257 (-)
G137248 NA non-coding upstream 133061 19768128 ~ 19774086 (-)
G137270 NA non-coding upstream 265139 19900206 ~ 19900440 (-)
G137384 NA non-coding upstream 532008 20167075 ~ 20227959 (-)
G137389 NA non-coding upstream 566497 20201564 ~ 20201895 (-)
G137390 NA non-coding upstream 574500 20209567 ~ 20212312 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 461435 19032603 ~ 19043449 (-)
AMCG00012467 NA other downstream 571683 18927379 ~ 18933201 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other downstream 967759 18516836 ~ 18537125 (-)
G136900 NA other downstream 1126587 18375330 ~ 18378297 (-)
G136837 NA other downstream 1267628 18205375 ~ 18237256 (-)
G137246 NA other upstream 79095 19714162 ~ 19793531 (-)
AMCG00012503 NA other upstream 268039 19903106 ~ 19910378 (-)
G137408 NA other upstream 625935 20261002 ~ 20270864 (-)
G137608 NA other upstream 1400096 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 1405022 21040089 ~ 21042443 (-)

Expression


Co-expression Network