G137232


Basic Information

Item Value
gene id G137232
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19617527 ~ 19622445 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172533
CTCCACCCCGATGTGGATCTTGCCCCCCTTCATCCCATGGAGGAAGCCCTGCATCAGCGTGGCCCACTGCAGGGAGAAAGACGCGATCAGGAAGTTGAAGCCCACGCTGCCGAAGCCGTAGCGCTTCAGGAAGGTCATGAGGAAGCCGAAGCCGACGAAGATCATCACGTGAACGTCCTGGAACTGGGGTATCTGTAGTAGAAGTCGTTCTCGACATCGGACTCATTGTGCTTCTCCTTCACCTGGTGCCACTTCTTGGCGTCTGTCTCTTTGTCATAGACCACGAGGGTCCCAAACAGGATGATCAGAATGAGCTCCAGGATGATGCAGACGATGGGCAGCTTCAGCCGCATGTTTGTCTTGTGGCTGGACATGGTTTCAGTGCCTTCGAGCCCTCAGCTCAAACAGACGCTCTGGTGAGATCTCACACGGCCCCAGGAGGGAGAGCAGACAACGGGGACTCCGGCTCCAGGGCAGTTCGCAGCCTGACTGACACTGCCTGTGCTTCTTTCAGGGCTTTTTTTTACCTCTCTGTCTTGGGTGTGAAGTGTCTACCGCCCCATCCCCATTTGTCCCCGCCTACCTCCACCTTGGCCacccaca

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172533 True 603 lncRNA 0.57 2 19617527 19622445

Neighbor

gene id symbol gene type direction distance location
AMCG00012494 NA coding downstream 27263 19586764 ~ 19590264 (-)
AMCG00012491 NA coding downstream 80422 19533480 ~ 19537105 (-)
AMCG00012490 LOC107577543,LOC107716568 coding downstream 99779 19510237 ~ 19517748 (-)
AMCG00012485 NA coding downstream 200251 19415947 ~ 19417276 (-)
AMCG00012482 NA coding downstream 294314 19300495 ~ 19323213 (-)
AMCG00012499 NA coding upstream 181181 19803626 ~ 19813830 (-)
AMCG00012498 ankrd34a,LOC106605449,LOC106580187 coding upstream 206055 19828500 ~ 19830155 (-)
AMCG00012500 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 268698 19891143 ~ 19895768 (-)
AMCG00012502 NA coding upstream 293367 19915812 ~ 19931090 (-)
AMCG00012501 NA coding upstream 312414 19934859 ~ 19947563 (-)
G137094 NA non-coding downstream 436169 19179139 ~ 19181358 (-)
G137014 NA non-coding downstream 691184 18925545 ~ 18926343 (-)
G137008 NA non-coding downstream 714689 18902473 ~ 18902838 (-)
G136997 NA non-coding downstream 830372 18786956 ~ 18787155 (-)
G136968 NA non-coding downstream 1003270 18614039 ~ 18614257 (-)
G137248 NA non-coding upstream 145683 19768128 ~ 19774086 (-)
G137270 NA non-coding upstream 277761 19900206 ~ 19900440 (-)
G137384 NA non-coding upstream 544630 20167075 ~ 20227959 (-)
G137389 NA non-coding upstream 579119 20201564 ~ 20201895 (-)
G137390 NA non-coding upstream 587122 20209567 ~ 20212312 (-)
G137199 NA other downstream 110133 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 574078 19032603 ~ 19043449 (-)
AMCG00012467 NA other downstream 684326 18927379 ~ 18933201 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other downstream 1080402 18516836 ~ 18537125 (-)
G136900 NA other downstream 1239230 18375330 ~ 18378297 (-)
G137246 NA other upstream 91717 19714162 ~ 19793531 (-)
AMCG00012503 NA other upstream 280661 19903106 ~ 19910378 (-)
G137408 NA other upstream 638557 20261002 ~ 20270864 (-)
G137608 NA other upstream 1412718 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 1417644 21040089 ~ 21042443 (-)

Expression


Co-expression Network