G137246


Basic Information

Item Value
gene id G137246
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19714162 ~ 19793531 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172548
ctatttaatatataaaatacggTAAAACATACGCAAAAAGGGAAGGTTTCAAGGAACAAATGGATACTTTGGTACAataacaaacacttttttttgtaaaagcagtatagaatttttttaataacatatcaGTGCATACtttgtttatgaaaatatacacaaattgTATATCATTCtccaaaaacaacagaaaagaaacatttttttttttacaacaaaacTCAAAGCAGACTAGCCGAACACAATATATTAGCtataattttcttctttaaactttttttttcagctacattttttttttttttaacttttgaggtttaatttttcatttgtaatacgtttcatttaaaaaaaaaaatatgatgttgATTATTACCGGTTTGTTTTACTCCCAtgcatttacattgtttaaatcatAGTTGTGTTTCCtggtttgaaataaattaaaaatccacgtttatatttttttgtatttttttgttgtttgttttttcactatCTCGTGTGtatgtcattattttacatttttgactaAAAATTGCAGCATTGAACTggtattgtttatatatttttttatattttttattttttttcttaactgtCCTCCATCCTTTAATATTTACTAATATCATAATTgcgtatttttttatatatttttttttttataaatcgtGCAATTGTAGCAACACCCcttttgaagaaacaaaaaataacaaaatgaaaaaacgaaattaaacaagaaaaaatatataatatttatatatatatttatatataataaaataaaatcaaaaaaatcAAATGACGGCTACCCTACACGAAAAcggcagaaaataaaatcatcgcttctctttaataataataataataataataataataaaaataataaaagacaatagAACTGTCACCAGCACAAATTAACACTAGAAAATGAGTGATATTCTAAAAACATCATAATACACCTTTAATAGGggtgtcgttttttttttttttcattttttttttttttttaaagattgtcGTTCAGATAGATTACATTGATTTTCTGTAGATAAGCTCTGTActgaagaaggagagaaagtCAGAGGGCTGTACACAAAAATTGCGAATGCCAGTGCTTAACAGTGACACAGGACGCGAGCTCAGATCCAACAGCAAGCGGGGGCCACAGCCGCTCCGGCTGCGTTTTTTGGGACGGCATCTGGCAGCGACGCCGAGGCTGGTCTGGGACGCAGCCACGTTGATAAGACTGACTCGCTTAGTGTcgcttttttccccacatttttCTTGCAAACCTCCACTGCTCGGTTTTGTCCCACGCTCAGACGATTTTCTAACTGCCACCCATTCCTTAACACCAAAAAGAGAAGGTGCGGTGAAATGGACTAAAGGGTGTTCTCTCCCCTGGCCCCAGTCTGTCCTGGTCCGGCAAAATATCCACAGAACCATTTCAATAGTAAAGGAAGGGGGGGGGTTAGCGGTGTGTGCGTTGTCAGACGCCAAACACTCCCCCCCAATCCCAAACCTCACACTCCCTTTCACGTCCGAGAGATaagctaaacaaaacaaaaccaagaaggGCCCGTCACATGCATATCGAGTCTCGGAAAGCGAGGTTCGATTCTTTAATGTGATAGTCGgtaaaaaaaagtcagtttCTCATTGGCCCCGGCGGATCATGTACACAGCCGAGCCGTGAAAAGGAGGCTGCGACTGAAACAAGCCAAACGTGCACCCCCTGCAGACAGCACTGTGAGTCGCAGTTTGGGAGGCGTGGCCGTTGGCAGACAGGGAGCGAGGGCAGGGTGGGAGCGAGGAGCAGGGAGGCCGTAGTCGTGGGAAATACAACGAGGAAGTGAAGGCGCAACGCCCTGCGTCACGCCACACTAAGTGGCAGTCCGGTGGGGAAGTCGGGGGACAACGCCATGTGCACACATCTGTGCCGACTTCCGTTCTGTCCGTATCAAAGTGCCACCCGGCATCCGCCCACGCGGTCAGCTGTTTATAAACCCCTCCCACCCTCCGAACACATCCACGTCAATGGCTTTACCCTTAAATCTGCTGAGaggaaaataaagtgtgtgagtgtgtttccAGCTTCCATGAGAAATTCAAGTTTCCTAAACGTCttggcaaaacaacaacaacagcaaccacTGAAggaaaaatcaaatgaaaaaaagacagCTTTTTGCTATATGTTCCAGGCGAAGATTACAATTGAaagtgtggtgggggggcaggatgGCAGGTGATACTAAATGGGATGTTTTTACAGCTTACAAAGTCATGGGGGAAGAGAGGCAAACTTGTCCTTTACTAGGGTTCCCAGCGAGGCACAACCTTCAACAGTTAACAGCAGTGgcagtttttggttttgtgtccTCGTCCCCACTCCCATCCTTCCCATTCCCATGCTGTCTGCATGTCCTGTGCCCTGTTTCTTGCTGGGATTTTCAAGGCCCACTTCTCCAAACAGTGGCCAAACGCCACACTGGCTACAGAAAGAACCAGTGTCTGCTGCTCAAAGCAGCAGgaagtgagtgtgagtgtgtgtgtgtgtgtgcaggagaaGGGAATTAGTGCTGCAAACGCCCATCACTGGTGCCAGCGGCCGTCTAGACTCGGGTACCACAAAATCAGCCAGACTACTCAGTCCCAGTCCTGCTGGATCCCAGTGTCATCTTGTTTTGGTTGGCAGCTCTCCCTTTCCTCATTTGAAAGCCAAAGGGAAATCATAATTGAGCTTAATGAGGCCTGCTGCCATTTATCAGCTCCTGAGCAGGCAGGGGATTGTGACGCTCCTCACAAAAGGTATACGGGTATCTTGTGATCCCCGGCCCCATAAAATcctatgttgttgtttttttataaaggcatcttatttaataatgcagtttaattaCGGCTTCAGGGGAGTCGCTAACCAGACTATCTTGGATCTAAAATGGTCAAATCGCAAGGGGACTCCAGGATCAAGGCGGATCGACGCTGCCCCAAACACACAACTCGGCGGACATCTGCTGAGCGGAACGGAAGTGCACAACACGGACTATGAGACTTCGTTACAGTCGCTACAATAATGTTTGTCCACTGGGCCATCTAGCATGTGTAACCCTTATTGCCAACCCCCCCACAGTGTCTGTGTCAGAAGAGATCAAATAGGGCAGCAGAACAGGCATCAATCAGCCAGATAGGATGGGCAAGGCGAGGAGGAAGTCGGAGACACAAAAAGGGGAATTCAAAGAGAGGTGAAAGATGAGACATTACATCATCAACCACGAGCAAAAcatttcccccctccccccgcgGATGGGCCGTGCCAAACCCTTTCGATGAAGGGATGGTgggcagaaaaaaagaaagaacttTCCATCCACTGTCAATAGTCCGTCTGAAATGATCACCGGTTCAGCAAAATTGCAGATGCTACTTCCTCTCCACAGCAACATCTTTGCCCGaaacatattacacacacacacattatatatatatatatatatatacatatatatatatacacatacataaatatagagACAGATCCACTGAGAATCAACAGCATATTTTTCAACCATTACTTTAGGGAtaacctttaaaatatatgtgaatatatatatatatatatatatatccctaaTGTCTACCCTCTCATTCACAATACACACATCTGTATCTctgattttctctttaaaaaccTACATAGCTTGAATGTTGTCTaaaattttataaatatatacccCCCACCCACCAACTATCGCTGAAAGGACGCTTCTCTGTTTGCTTACGAAAAGAAAGCTAAGTTGGCTGTACAGGAACACTGAGAGCACAAGGAGGTGTATATACATAGATCTTTGTCAGCCACCGTCTTCCGTCTCttctttttagtttttttttttttttttttttttttggggggggggcacattttaaacaaacacgtTTCCAGGATGATGTATAGTCATGAGACATGTCCTCCGTCCCACGTTGCTCCGCGGGGGCCTCTTGTCCTCTTGATGGACAGCTT
>TU172550
ctatttaatatataaaatacggTAAAACATACGCAAAAAGGGAAGGTTTCAAGGAACAAATGGATACTTTGGTACAataacaaacacttttttttgtaaaagcagtatagaatttttttaataacatatcaGTGCATACtttgtttatgaaaatatacacaaattgTATATCATTCtccaaaaacaacagaaaagaaacatttttttttttacaacaaaacTCAAAGCAGACTAGCCGAACACAATATATTAGCtataattttcttctttaaactttttttttcagctacattttttttttttttaacttttgaggtttaatttttcatttgtaatacgtttcatttaaaaaaaaaaatatgatgttgATTATTACCGGTTTGTTTTACTCCCAtgcatttacattgtttaaatcatAGTTGTGTTTCCtggtttgaaataaattaaaaatccacgtttatatttttttgtatttttttgttgtttgttttttcactatCTCGTGTGtatgtcattattttacatttttgactaAAAATTGCAGCATTGAACTggtattgtttatatatttttttatattttttattttttttcttaactgtCCTCCATCCTTTAATATTTACTAATATCATAATTgcgtatttttttatatatttttttttttataaatcgtGCAATTGTAGCAACACCCcttttgaagaaacaaaaaataacaaaatgaaaaaacgaaattaaacaagaaaaaatatataatatttatatatatatttatatataataaaataaaatcaaaaaaatcAAATGACGGCTACCCTACACGAAAAcggcagaaaataaaatcatcgcttctctttaataataataataataataataataataaaaataataaaagacaatagAACTGTCACCAGCACAAATTAACACTAGAAAATGAGTGATATTCTAAAAACATCATAATACACCTTTAATAGGggtgtcgttttttttttttttcattttttttttttttttaaagattgtcGTTCAGATAGATTACATTGATTTTCTGTAGATAAGCTCTGTActgaagaaggagagaaagtCAGAGGGCTGTACACAAAAATTGCGAATGCCAGTGCTTAACAGTGACACAGGACGCGAGCTCAGATCCAACAGCAAGCGGGGGCCACAGCCGCTCCGGCTGCGTTTTTTGGGACGGCATCTGGCAGCGACGCCGAGGCTGGTCTGGGACGCAGCCACGTTGATAAGACTGACTCGCTTAGTGTcgcttttttccccacatttttCTTGCAAACCTCCACTGCTCGGTTTTGTCCCACGCTCAGACGATTTTCTAACTGCCACCCATTCCTTAACACCAAAAAGAGAAGGTGCGGTGAAATGGACTAAAGGGTGTTCTCTCCCCTGGCCCCAGTCTGTCCTGGTCCGGCAAAATATCCACAGAACCATTTCAATAGTAAAGGAAGGGGGGGGGTTAGCGGTGTGTGCGTTGTCAGACGCCAAACACTCCCCCCCAATCCCAAACCTCACACTCCCTTTCACGTCCGAGAGATaagctaaacaaaacaaaaccaagaaggGCCCGTCACATGCATATCGAGTCTCGGAAAGCGAGGTTCGATTCTTTAATGTGATAGTCGgtaaaaaaaagtcagtttCTCATTGGCCCCGGCGGATCATGTACACAGCCGAGCCGTGAAAAGGAGGCTGCGACTGAAACAAGCCAAACGTGCACCCCCTGCAGACAGCACTGTGAGTCGCAGTTTGGGAGGCGTGGCCGTTGGCAGACAGGGAGCGAGGGCAGGGTGGGAGCGAGGAGCAGGGAGGCCGTAGTCGTGGGAAATACAACGAGGAAGTGAAGGCGCAACGCCCTGCGTCACGCCACACTAAGTGGCAGTCCGGTGGGGAAGTCGGGGGACAACGCCATGTGCACACATCTGTGCCGACTTCCGTTCTGTCCGTATCAAAGTGCCACCCGGCATCCGCCCACGCGGTCAGCTGTTTATAAACCCCTCCCACCCTCCGAACACATCCACGTCAATGGCTTTACCCTTAAATCTGCTGAGaggaaaataaagtgtgtgagtgtgtttccAGCTTCCATGAGAAATTCAAGTTTCCTAAACGTCttggcaaaacaacaacaacagcaaccacTGAAggaaaaatcaaatgaaaaaaagacagCTTTTTGCTATATGTTCCAGGCGAAGATTACAATTGAaagtgtggtgggggggcaggatgGCAGGTGATACTAAATGGGATGTTTTTACAGCTTACAAAGTCATGGGGGAAGAGAGGCAAACTTGTCCTTTACTAGGGTTCCCAGCGAGGCACAACCTTCAACAGTTAACAGCAGTGgcagtttttggttttgtgtccTCGTCCCCACTCCCATCCTTCCCATTCCCATGCTGTCTGCATGTCCTGTGCCCTGTTTCTTGCTGGGATTTTCAAGGCCCACTTCTCCAAACAGTGGCCAAACGCCACACTGGCTACAGAAAGAACCAGTGTCTGCTGCTCAAAGCAGCAGgaagtgagtgtgagtgtgtgtgtgtgtgtgcaggagaaGGGAATTAGTGCTGCAAACGCCCATCACTGGTGCCAGCGGCCGTCTAGACTCGGGTACCACAAAATCAGCCAGACTACTCAGTCCCAGTCCTGCTGGATCCCAGTGTCATCTTGTTTTGGTTGGCAGCTCTCCCTTTCCTCATTTGAAAGCCAAAGGGAAATCATAATTGAGCTTAATGAGGCCTGCTGCCATTTATCAGCTCCTGAGCAGGCAGGGGATTGTGACGCTCCTCACAAAAGGTATACGGGTATCTTGTGATCCCCGGCCCCATAAAATcctatgttgttgtttttttataaaggcatcttatttaataatgcagtttaattaCGGCTTCAGGGGAGTCGCTAACCAGACTATCTTGGATCTAAAATGGTCAAATCGCAAGGGGACTCCAGGATCAAGGCGGATCGACGCTGCCCCAAACACACAACTCGGCGGACATCTGCTGAGCGGAACGGAAGTGCACAACACGGACTATGAGACTTCGTTACAGTCGCTACAATAATGTTTGTCCACTGGGCCATCTAGCATGTGTAACCCTTATTGCCAACCCCCCCACAGTGTCTGTGTCAGAAGAGATCAAATAGGGCAGCAGAACAGGCATCAATCAGCCAGATAGGATGGGCAAGGCGAGGAGGAAGTCGGAGACACAAAAAGGGGAATTCAAAGAGAGGTGAAAGATGAGACATTACATCATCAACCACGAGCAAAAcatttcccccctccccccgcgGATGGGCCGTGCCAAACCCTTTCGATGAAGGGATGGTgggcagaaaaaaagaaagaacttTCCATCCACTGTCAATAGTCCGTCTGAAATGATCACCGGTTCAGCAAAATTGCAGATGCTACTTCCTCTCCACAGCAACATCTTTGCCCGaaacatattacacacacacacattatatatatatatatatatatacatatatatatatacacatacataaatatagagACAGATCCACTGAGAATCAACAGCATATTTTTCAACCATTACTTTAGGGAtaacctttaaaatatatgtgaatatatatatatatatatatatatccctaaTGTCTACCCTCTCATTCACAATACACACATCTGTATCTctgattttctctttaaaaaccTACATAGCTTGAATGTTGTCTaaaattttataaatatatacccCCCACCCACCAACTATCGCTGAAAGGACGCTTCTCTGTTTGCTTACGAAAAGAAAGCTAAGTTGGCTGTACAGGAACACTGAGAGCACAAGGAGGTGTATATACATAGATCTTTGTCAGCCACCGTCTTCCGTCTCttctttttagtttgtttttttttttgtttgttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172548 True 4030 TUCP 0.41 2 19714162 19793531
TU172550 False 3916 TUCP 0.41 2 19744335 19793531

Neighbor

gene id symbol gene type direction distance location
AMCG00012494 NA coding downstream 123898 19586764 ~ 19590264 (-)
AMCG00012491 NA coding downstream 177057 19533480 ~ 19537105 (-)
AMCG00012490 LOC107577543,LOC107716568 coding downstream 196414 19510237 ~ 19517748 (-)
AMCG00012485 NA coding downstream 296886 19415947 ~ 19417276 (-)
AMCG00012482 NA coding downstream 390949 19300495 ~ 19323213 (-)
AMCG00012499 NA coding upstream 10095 19803626 ~ 19813830 (-)
AMCG00012498 ankrd34a,LOC106605449,LOC106580187 coding upstream 34969 19828500 ~ 19830155 (-)
AMCG00012500 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 97612 19891143 ~ 19895768 (-)
AMCG00012502 NA coding upstream 122281 19915812 ~ 19931090 (-)
AMCG00012501 NA coding upstream 141328 19934859 ~ 19947563 (-)
G137214 NA non-coding downstream 79095 19504884 ~ 19635067 (-)
G137232 NA non-coding downstream 91717 19617527 ~ 19622445 (-)
G137094 NA non-coding downstream 532804 19179139 ~ 19181358 (-)
G137014 NA non-coding downstream 787819 18925545 ~ 18926343 (-)
G137008 NA non-coding downstream 811324 18902473 ~ 18902838 (-)
G137270 NA non-coding upstream 106675 19900206 ~ 19900440 (-)
G137384 NA non-coding upstream 373544 20167075 ~ 20227959 (-)
G137389 NA non-coding upstream 408033 20201564 ~ 20201895 (-)
G137390 NA non-coding upstream 416036 20209567 ~ 20212312 (-)
G137449 NA non-coding upstream 582912 20376443 ~ 20377953 (-)
G137199 NA other downstream 206768 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 670713 19032603 ~ 19043449 (-)
AMCG00012467 NA other downstream 780961 18927379 ~ 18933201 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other downstream 1177037 18516836 ~ 18537125 (-)
G136900 NA other downstream 1335865 18375330 ~ 18378297 (-)
AMCG00012503 NA other upstream 109575 19903106 ~ 19910378 (-)
G137408 NA other upstream 467471 20261002 ~ 20270864 (-)
G137608 NA other upstream 1241632 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 1246558 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 1640133 21433664 ~ 21635426 (-)

Expression


Co-expression Network