G137337


Basic Information

Item Value
gene id G137337
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20170426 ~ 20237873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172659
tgcacacagagagagagagagagagagagagagagagagagaggggagaaggtGGTGAGGGATTAAATCCAAACTCCCTACCAAtgtctctcgttctctctcactgtctctggcagcgcctgtgtgtgtgtgtgtgtgcgcgtgtgtatTTGCTGATCATCCTCgctgcgtgtgtgcatgtgtgtgtggttgtgtgcgtctctgttgTGTATCTGTGAATATTTGTTCatctttatttgctttttttcccccatgttaTTGCATGTAAATTGATCCTTATTCTCAATATTATATTATCAACCTCATTATCATTATCACTATTCTTATTATCTTTGTTCGTAAGCCAAAGCCAAAGTAGTCACATTGTTTAGTCATTGTAAACACTTACTGTTGATTcctgaattatgtttttgtacactttctgaTAATGTTGTgaggaaataagaaaaaaaagtttacatcaATAtcgataaatatatattatatatatacagtatatatcttTCACAGTTTCCTGGTGGTtat
>TU172660
cacagagagagatatagagagagagagagagagagagaggggagaaggtGGTGAGGGATTAAATCCAAACTCCCTACCAAtgtctctcgttctctctcactgtctctggcagcgcctgtgtgtgtgtgtgtgtgcgcgtgtgtatTTGCTGATCATCCTCgctgcgtgtgtgcatgtgtgtgtggttgtgtgcgtctctgttgTGTATCTGTGAATATTTGTTCatctttatttgctttttttcccccatgttaTTGCATGTAAATTGATCCTTATTCTCAATATTATATTATCAACCTCATTATCATTATCACTATTCTTATTATCTTTGTTCGTAAGCCAAAGCCAAAGTAGTCACATTGTTTAGTCATTGTAAACACTTACTGTTGATTcctgaattatgtttttgtacactttctgaTAATGTTGTgaggaaataagaaaaaaaagtttacatcaATAtcgataaatatatattatatatatacagtatatatcttTCACAGTTTCCTGGTGGTtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172659 True 525 lncRNA 0.37 2 20170426 20237873
TU172660 False 521 lncRNA 0.37 2 20177081 20237873

Neighbor

gene id symbol gene type direction distance location
AMCG00012511 NA coding upstream 35773 20133322 ~ 20134653 (+)
AMCG00012496 NA coding upstream 313723 19852153 ~ 19856703 (+)
AMCG00012497 NA coding upstream 344163 19817519 ~ 19826263 (+)
AMCG00012495 NA coding upstream 382784 19763003 ~ 19787642 (+)
AMCG00012492 NA coding upstream 543057 19617738 ~ 19627369 (+)
AMCG00012514 NA coding downstream 1961 20239834 ~ 20240031 (+)
AMCG00012517 NA coding downstream 45376 20283249 ~ 20291367 (+)
AMCG00012518 LOC107669979 coding downstream 62953 20300826 ~ 20327286 (+)
AMCG00012515 NA coding downstream 110734 20348607 ~ 20353279 (+)
AMCG00012519 NA coding downstream 134807 20372680 ~ 20385756 (+)
G137242 NA non-coding upstream 376894 19788987 ~ 19793532 (+)
G137196 NA non-coding upstream 480641 19659746 ~ 19689785 (+)
G137177 NA non-coding upstream 661228 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 744888 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 774673 19361344 ~ 19395753 (+)
G137364 NA non-coding downstream 83733 20321606 ~ 20328824 (+)
G137494 NA non-coding downstream 295879 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 519157 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 982326 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 994107 21231980 ~ 21267912 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 274827 19891167 ~ 19895599 (+)
G137252 NA other upstream 354809 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 820224 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 931468 19237689 ~ 19238958 (+)
G137083 NA other upstream 996005 19169748 ~ 19174421 (+)
AMCG00012512 NA other downstream 8778 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 93208 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 163136 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 193052 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 243241 20481114 ~ 20493787 (+)

Expression


Co-expression Network