G137348


Basic Information

Item Value
gene id G137348
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20201551 ~ 20201804 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172672
gtcttgtagcccattccagccttgtgtaggtctacactcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcactccctttaagagagtgctcctaatctcagctcattacctgtataaaagacacctgggagccagaaaacttgctgattgataggggatcaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU172672 True 222 lncRNA 0.47 2 20201551 20201804

Neighbor

gene id symbol gene type direction distance location
AMCG00012511 NA coding upstream 66898 20133322 ~ 20134653 (+)
AMCG00012496 NA coding upstream 344848 19852153 ~ 19856703 (+)
AMCG00012497 NA coding upstream 375288 19817519 ~ 19826263 (+)
AMCG00012495 NA coding upstream 413909 19763003 ~ 19787642 (+)
AMCG00012492 NA coding upstream 574182 19617738 ~ 19627369 (+)
AMCG00012513 shc1 coding downstream 24594 20226398 ~ 20234055 (+)
AMCG00012514 NA coding downstream 38030 20239834 ~ 20240031 (+)
AMCG00012517 NA coding downstream 81445 20283249 ~ 20291367 (+)
AMCG00012518 LOC107669979 coding downstream 99022 20300826 ~ 20327286 (+)
AMCG00012515 NA coding downstream 146803 20348607 ~ 20353279 (+)
G137242 NA non-coding upstream 408019 19788987 ~ 19793532 (+)
G137196 NA non-coding upstream 511766 19659746 ~ 19689785 (+)
G137177 NA non-coding upstream 692353 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 776013 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 805798 19361344 ~ 19395753 (+)
G137364 NA non-coding downstream 119802 20321606 ~ 20328824 (+)
G137494 NA non-coding downstream 331948 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 555226 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 1018395 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 1030176 21231980 ~ 21267912 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 305952 19891167 ~ 19895599 (+)
G137252 NA other upstream 385934 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 851349 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 962593 19237689 ~ 19238958 (+)
G137083 NA other upstream 1027130 19169748 ~ 19174421 (+)
AMCG00012512 NA other downstream 44847 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 129277 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 199205 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 229121 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 279310 20481114 ~ 20493787 (+)

Expression


Co-expression Network