G137558


Basic Information

Item Value
gene id G137558
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20819325 ~ 20829367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172957
GCCTAGTCCAGGATCTTCTGCCAGAAGTCAACGAGTTGGGCCTGCAGGTTGTCTGCCACGGGCTTCACCTGGGCCTGCAGGTTGTCTGTCACGGGCTTCACCTGGGCCTGCAGGTTGTCAGCCATGGGTTTGAGCTGCTCCTCCAGGTTGTCCACGAGGGGCTTTAGTTGGGCCTGGAGGTTGTCAGCCAGGGGCTGCAGCTGAGCTTTACCGTCTTGCAAGTAAGCCCTGGAGGAGGACACAGGAGAACATGAGGACACCAGAAGAGATTTGCACATCGCTTTGCAGCTTTTTTCTATGGGTTCAATCCACCTTCACTCAGCTTTACTAAAGTGGGCCATGggaatacatgtttaatatggCAGACAGATTGATTCATAAGAGAGTGTATTCAAAAATAGTGAAGGAATGTTAAAACCGGAGGCATCTGCTTTTTAGACCAAGGTACAAGTGAAGcaaaaccatgttaaaaagTGTAAAGTTCCTATGGCTCATTTATCAGGGTAAAATTCCATAAAGGTGGGAACATTGAAGATTTGAGTGGTGTCGTAACTTTGTCCACTGAACAGGATTGACTGTCATAGTCAATAAGAGACATATGACACACAGACAATTAGTCGAGTTACCCTTCAGTACTATAGCTAATGTCACCATGTTACACACTTCCATTGTGATCAAACTAACCAATGAGATATTCTCAAAACAATGTGGAATGCACACGTCACCTCTACTTGTACATGGACTATTTAGTGCTTCTTCTTTCATATTATTTAGGGCCCTGCGCTTTCCAACTATTATATTTGGAAGGCTGTAACACATATTGGGAGCAAGTCTTCCCAAGGTTCTCGAAACTGGACAAGATAATGAATGCCTATTTGGAATGTCAATTCCATGATAACAccaatgaatacattaatcttAATAGACAGGTGTGCAATAAAAGATGTTTCACACAACCCTAGCAGACTGAGTATCTGTTGAATGTCAAGAAGCAGCTGTGTTATTGGTCAAGCACACGGGCCAGGTTTGGAGTACACTGTCTGAATTATGAGTCAATTGTAGGCTTTTACTAGTTAAGCCCCTcaaatttgtttgaaataacCAATGTTTGAAATAACATCTGGACTTTGATAGATGGATGTCTTTTCTGGTTTGTTGCCAGGATAAGAATAACTTACTGAGCCTTGTCCGCCAGTTCCTGAGCCTTCACTTTGTCCACAATATCCTGGGTGGTGCTGGAAATCAGGGCAGACAGATCCTGGAAGTACTTGGTCAGAGTTTCCAGGTCTGTCTTGGCGGGCTCATCCCTCAGGTAGGAGGCATCACTGCCTAGAAGAGAGCAAACAACATCCGACTAAAACCAAAGTAGAGTCAAAGTGGGTCCATCCTGTGGGTCAGCCCAGGTCCTGGAGGGTATGGTACAAGGTATTCTGGTCTGTGTATCTGCTAAACCAGTTCAAGCAATGCTTCCATGATATAAGGTTGGAAGAGCCCTACAAAACCACAGGCGACCTGCAGATACAGGCTTTTTCAAATTGGTCTCTATGCTGAAAGAAAATTTATTTTGAGGCATTGTTACGACTGAAGAAACCCTTatcaaagataaataaatttGTGGAATTGTGATTTTTGATTCCATTTAGTCTATCATACTTTCCATAGACCCTtccaaaataaattgtgtttgcTTGTGTCTGGTTagggaaataataatatcaacagTCTACATTTTCTCAAAGACCTGAAATAGCACTACACCCTGTGGAAAATATCAATATCATATGCTGTGAACTGGGAGGGGCTAAGGTTGTTTTACCATGTGTCAGAGCCAATACGACAACAAAGGCGGCGAACAGGGAGAACTTCATGGCTGAGGATTGGGTGGAGTACCTGTCCATGAAACAGAACAACTTTATTACAATGTGTCTGTGGCACGGGGAAGCTGTGAAAGCATTTGTTAAAAAGGGGACCCAATGTCCTGATGGGTCTTGGTTATTCGATTTTTATTCTAGACTGCCAATTAATTCACTGaatcttaaaatgaaataatttgccTATTCAGAAGTTTTAAATGATAAACAGTTTaaacaatctggaacaaactccacagcgatgtggtagaagctgaaagtttgggaacatttaaaactggataggatccttggatcacttagatattaacggacaccaaacgagcacgatgggtcgaatggcctcctctcgtttgtaaactttcttatgttcttatgttcttaagattTCAAGTTGAACATAAGAAGGTATAAAGCACTTGAATTATCCAGTTTTTATAAGCTATACCATTATAATATTTAAGcacaattcaatttcaaattattaataaaatgtaggtCTAAATGAAGTATGtgagcaaaaaaataaacagagaagGACTGTGGGTCCTCAGGACTAGTGTTGAAAATCACTGATCTAGCTTGGCTATTAAACCAGTGATAGCCTTAGATATAAATTATTccagaatataatataaaaggtTCATCCTGCTTTGTTATGCTAGCACAAGTGTCATACAAAAAGATACCATCGTTCAGTAAGTTAGATCACTATGATAAatagtttacattttgtatgtggtAAACCACAAAAGACCACAGACTGAATGAAATGCACAACggaatacagtattttttatatatatatatatatatatatgcatgtaaatgacaacatttattatttagagCTTGAAAACATCTATATCTGAAAGTACTTATGACCAGCAATATACCTATAGAAAGTCAGATGGATTTTAATCATTAGTTGGCTTGTGATTAGCTTTTCTGTGGCTGTTCTCAATGCATTGGAAAGACATAGGAAAGACATAGGAAAGCCATCAATGGAAATATACAATAGTTTGCCAATTGTGACTGCATTTCCAGGAAtatgatttgaaatacaaaatacacaatacatccAAACTACTTGAAGAATTCAGGTAGTATACTGGATTGGATGAGTCTccataataacaattatttatttcattgcaaCATATACACTTAATCTAGGCATCTATCTTCAAGTTAGCACTTTCTCCTAACAGTCCAACTCTCATGAATGGTTATAAAATGTGGCACCATTAATGTTGCATGTTGTATGTTGCATGCATTTCCTGTTATACCATTTTAAATTGGACAGTCCCTATTCAAACTAATGGCTTGAAAAGAGCTTTTGCCAATCAAAAGAACTGAAACAAGACCCACATACTGTTTAAATTGTATCTATAGatgcttatatatttatataccccCATCTATCAAAACTGATAGCTACActaattaatatgaaaacagTGCAGCAAGTTTGAAGAAGTCCCTTACCTTTACTGCTTAAGTGTTCAGGCTTGGTGGTATCGTACCAACTCCTGTGGCCAAGGGTTTTTATAGCAATCTGGAGGAAAAGGGGCTGACACTGATAGGCTGCCCACAATGGGGCTTCCCAGCCTGTCAGGATTGGCTAGCGTGAGCAA

Function

GO:

id name namespace
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU172957 True 3508 lncRNA 0.39 2 20819325 20829367

Neighbor

gene id symbol gene type direction distance location
AMCG00012524 NA coding downstream 76327 20703429 ~ 20742998 (-)
AMCG00012520 NA coding downstream 522264 20292730 ~ 20297061 (-)
AMCG00012507 smg5 coding downstream 640361 20168155 ~ 20178964 (-)
AMCG00012508 paqr6,LOC107728479,LOC107688246 coding downstream 662113 20147777 ~ 20157212 (-)
AMCG00012509 NA coding downstream 700760 20113894 ~ 20118565 (-)
AMCG00012526 NA coding upstream 3574 20832941 ~ 20834492 (-)
AMCG00012528 NA coding upstream 29358 20858725 ~ 20859203 (-)
AMCG00012527 NA coding upstream 29898 20859265 ~ 20862618 (-)
AMCG00012537 NA coding upstream 72357 20901724 ~ 20905761 (-)
AMCG00012545 NA coding upstream 290749 21120116 ~ 21121378 (-)
G137517 NA non-coding downstream 241482 20569818 ~ 20577843 (-)
G137518 NA non-coding downstream 267180 20542765 ~ 20552145 (-)
G137495 NA non-coding downstream 282131 20536948 ~ 20537194 (-)
G137472 NA non-coding downstream 395645 20423387 ~ 20423680 (-)
G137449 NA non-coding downstream 441372 20376443 ~ 20377953 (-)
G137559 NA non-coding upstream 3632 20832999 ~ 20916282 (-)
G137591 NA non-coding upstream 122571 20951938 ~ 20956378 (-)
G137605 NA non-coding upstream 200725 21030092 ~ 21093996 (-)
G137601 NA non-coding upstream 205163 21034530 ~ 21039767 (-)
G137619 NA non-coding upstream 267555 21096922 ~ 21097296 (-)
G137408 NA other downstream 548461 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 908947 19903106 ~ 19910378 (-)
G137246 NA other downstream 1025794 19714162 ~ 19793531 (-)
G137199 NA other downstream 1311931 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 1775876 19032603 ~ 19043449 (-)
G137608 NA other upstream 205796 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 210722 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 604297 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 664860 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 1248806 22078173 ~ 22088469 (-)

Expression


Co-expression Network