G137628 (LOC100380645,LOC107688237,LOC108256176,LOC106605293,LOC108433883,LOC107592459)


Basic Information

Item Value
gene id G137628
gene name LOC100380645,LOC107688237,LOC108256176,LOC106605293,LOC108433883,LOC107592459
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21166458 ~ 21169358 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173063
TTTACAAACTCATACTTATTTATTCACCCGTCCATTCACTCATccatttatatatgcatatgtatatacagttaaaacacaccaaaaggcagaaaaaaaaacaagaaaacaatcatGATAAAAAAGAAAGTCTGAAGGGCCAAATCCTTCCTTTGTCTTAcccaagtgtttttttctttctttctagaaggcgaaagtttttttgttttttttaaatgcacaacaacaaaacaaagcaaaaacaatcaaaatgaaaaggCCGAAGGATTAGGAAGAAGATTTTGAAGGAAGATAAAAAACCAAAACAGTAGAGAACCCAATTTGTGGGGGGGATTAGAACCGAAACAAAGTTGACACAGCCGGCCAGCGTACCTGTGACATTACTCTCACTCTGTCCCGCCCCAGTGAGGTGGAATAAAACTTGCATGAGTGAATACAGTGTTGAAAATCTTCCATTTTCACACGTAAGGGCAGAAGTGTGACAAGTCGGCTTAATGGAAAACCCaagaagtgtttgtgtgttcaaGGACGCTTGTGTGACTCACCCCACAAAGCTCTTTCATTTTATTGGTTGTGCAGCAGTAAAGCTTTCACTGTTTCCCCGCACAGTAGCTTGCACGAGCCTTTGACTTAGAATGGTGCCCAATTGTCAGGGGAATGTGAACTCAACcgtgtcttttttttcccaaccAGACCACAATCCACGTAGTTAAACAAGTCCCTTTTACATCAGTTGTATTCGTTTTTTTATACAAGTTTACCACAGGGGTCACCTTTAGCAAATCACTCCTGTCTTTCTACAGGTTCTGGAATGAGTGTAGTGTCAAGTGCCACAGAAGCAAGACGTGCCTCACTACTGGAAGACAGATGCCAACATCTAGAACTTGTATAGCGAGTTGACTAGATGACAGTTTTAAAGGCGACTAGTTCAAGTTGCCAGATACAAAATGATGAGTCTGACTTAACAAATACTTGTCAGTCTGAGTATTCAGtgtctttgttttgctcttgttCTGTGTAGTAGTGTGGGGAGTCAGTTTGCCTAGTAGGTTACCCCAACCTTAGACCAGGAGAGTGCAAAATCTATCAGCTTTAATAGATGATTTCCATCAGTGGCTAAAGAACATCTAGGCTAATTAGGCCCTTGATtggatcatttttgttttctgggaGCTTGGCTGCAATAAGAACAAGATCAACTCCAGGTCAAAGTGTAAGGAGCAGTTTTAACAGCATCTGCACACGacaatgtatttcatttactCCAGTCGTTTTTCAACCAAAAAGGGGGGGTCATTAAAAATCAGAATAACCAGTGTAATCGAAGTACAGTGGAGTCTCAATGGTATGTTTTGCCTCTTGTGTTTGTTCCAATGGCTTTGAACTTCATGTCCAATGCACgtctttattttcttgcagCGCCAGACACGATTTCAAACGATCAAAACTGCTTTCGCGGTCTCTTATTGCAGGAAAGGAACAAAGGAAAGAGcatcaaaatacatataaaccaCAGTAGTGCAGGCCTTACAAAACAGGctgcagaacaaaaacaaaagaaagtccCGTTTTTAAAGTGAATTCCCAACTACTGTCAGATATTTGGCCAattctgtgtgtcagtcacttTGATTGGCTAGTGTATGTACTGCTCATTATTTGGCAGATGCCATCGTCCAAGGCGGCTTACAAGTGGACCTACGAGTGTCCCAGCAAAGAGAGGGCAAGGGTTCAATCAGGCCTCCCCGTGATCCTGCTTACGCCGAatagtttccttttctgtcGTGGTTTGTATTCCGATCAATGCCAGATATTGACCGAAATGATACCCTCTCTTGCCAGGTCGCCGGTTCACACGAGCTGAACCTGATTCAGTTATCTGGGTCTACGCAACCATAATGAGATAATCTTCCATCAGATCCAGGGCACCGTTAACGAGGGcaacagattttcttttcttttttgttcctctTTTTCCTGGAAACAATACAAACGTTTCCAGTCCAGTTTCCCCCcctcctctatctctctctctctctctcacgctctTTCTTTGTGCTGTCGccaccacaaaaaaactaaaaatgcacaaaaaacagCTGGTATTTTTCATCAGGGACCCACTTGAGCCAATCTGGAGAGTTTTGTAACACGATGCAACAAAcaacttttcttttgtttgtttggtttgtttggagGGACGTCCATCTTGTTTGCGTTACAGTAGTGTACCGGTTTTCTCATGGTCCCCCTCTGCACGCTCCACCGTTCCCACTGCAGCTGCTCCGCCAACGTTGCTGTCCCTTGCCTTGTTTCTCCCTGGGTCCCCAGATTTCATTTTGGGAACAAACCAAGTCCCTTCAGTGctgaaaatgccccccacaccAACCCCCAGCAGATCCTGTAGTCAGTGGGCCTTCCACTCCTCAGGGGTGGAGAGAGTACATGCGTTGGCAGTAGCATCAGTGTGTCCTGGAGgtgtgggggcggggggtggcAGTGCTGGTGGGGGTGCTTGGGGatgagagggatggagagagattGAGACTGTGGGGGGTGTTAAGGCCCGCCCTCGTTGTAGTGCAAGGAGAGGCCCCGGTCCCTCTGCACGGGCATGTAGGGCCAGTTGTAGCTGGAGCCCGACAGCAGCATGTCCCTGAGCAGGGTCTCGATGGGGGTCTTGCCCACCAGGCGCACGAAGAACAGCTGCTCGATGACGGGCGAGGAGACGATGCGCAGGGAGGGCAGGCGCAGCAGCAGACGGCCAAAGCGGTTGGGCTGCCCGGGGTACTGGTTGCGCACATACTCCTCCAAGGCACACTGCGACTTCTCCTGCACGCTCTCCACGTGCGCCGCGTCCGACAGGCCCATGGCGTctg

Function

NR:

description
Nuclear receptor subfamily 2 group F member 5, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173063 True 2879 lncRNA 0.46 2 21166458 21169358

Neighbor

gene id symbol gene type direction distance location
AMCG00012545 NA coding downstream 45080 21120116 ~ 21121378 (-)
AMCG00012537 NA coding downstream 260697 20901724 ~ 20905761 (-)
AMCG00012527 NA coding downstream 303840 20859265 ~ 20862618 (-)
AMCG00012528 NA coding downstream 307255 20858725 ~ 20859203 (-)
AMCG00012526 NA coding downstream 331966 20832941 ~ 20834492 (-)
AMCG00012548 NA coding upstream 18819 21188177 ~ 21212016 (-)
AMCG00012547 NA coding upstream 55383 21224741 ~ 21230841 (-)
AMCG00012552 NA coding upstream 100382 21269740 ~ 21274408 (-)
AMCG00012551 NA coding upstream 113943 21283301 ~ 21290412 (-)
AMCG00012554 NA coding upstream 180087 21349445 ~ 21358802 (-)
G137619 NA non-coding downstream 69162 21096922 ~ 21097296 (-)
G137605 NA non-coding downstream 72462 21030092 ~ 21093996 (-)
G137601 NA non-coding downstream 126691 21034530 ~ 21039767 (-)
G137591 NA non-coding downstream 210080 20951938 ~ 20956378 (-)
G137559 NA non-coding downstream 250176 20832999 ~ 20916282 (-)
G137699 NA non-coding upstream 134114 21303472 ~ 21306761 (-)
G137701 NA non-coding upstream 138860 21308218 ~ 21315238 (-)
G137711 NA non-coding upstream 194934 21364292 ~ 21364924 (-)
G137709 NA non-coding upstream 255813 21425171 ~ 21426245 (-)
G137733 NA non-coding upstream 481405 21650763 ~ 21657742 (-)
AMCG00012541 NA other downstream 124015 21040089 ~ 21042443 (-)
G137608 NA other downstream 128027 21035163 ~ 21038431 (-)
G137408 NA other downstream 895594 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 1256080 19903106 ~ 19910378 (-)
G137246 NA other downstream 1372927 19714162 ~ 19793531 (-)
AMCG00012559 NA other upstream 264306 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 324869 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 908815 22078173 ~ 22088469 (-)
AMCG00012566 NA other upstream 934295 22103653 ~ 22120556 (-)
G137974 LOC107575789 other upstream 1752525 22921883 ~ 23049378 (-)

Expression


Co-expression Network