G137629


Basic Information

Item Value
gene id G137629
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21270360 ~ 21332070 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173067
tCTGAGCATaggctaatttattttatttcttaatgaaggtttaaaagaaaagcattttttaaataaacgatatatattgtgatatatttgcAACATTGATGGAGCTGTCTGTCTTATCTCACTGAAGCGGAGAGGAAGCAGCAGGACTCTGACAGCATCGAGGGTGAGTTGTAAACAGCCGTGTGTGAAAGGCAGCTCTGAAGATGGCAGAAGAGCTCCTGcagacattcacacacagactcCAAGGCTCTTCCTCTAGAAACCCTCACTCCCCCTGCAGTGGCTGTGCAGGTGACTCGgtgttcccctctctccccctgtgcAGGTCCAGCCggctctctctgtcactctgtaTACTGCGGAGGGGGGGTCTTGGGAAAAGCGTCCTGCTCTGTGTCCGGTGCCAGCTGGTAGCCCGGGGGATTGCTGGGCTGTGTTGCTGGCTGAGAGTTAGCCCCATACTGTATGACAATCACAGGCGCAGGACGCTTTTCCCAAGACCCCCCCTCTGCAGTAtacagagtgacagagagagtcGGCTGAACCTGCAcagtgggagagaggggaacACCGAGTCACCTGCACAGCCACTGCAGGGGGAGTGGGGGTTTCTAGAGGAAGAG
>TU173071
tCTGAGCATaggctaatttattttatttcttaatgaaggtttaaaagaaaagcattttttaaataaacgatatatattgtgatatatttgcAACATTGATGGAGCTGTCTGTCTTATCTCACTGAAGCGGAGAGGAAGCAGCAGGACTCTGACAGCATCGAGGGTGAGTTGTAAACAGCCGTGTGTGAAAGGCAGCTCTGAAGATGGCAGAAGAGCTCCTGcagacattcacacacagactcCAAGGCTCTTCCTCTAGAAACCCTCACTCCCCCTGCAGTGGCTGTGCAGGTGACTCGgtgttcccctctctccccctgtgcAGGTCCAGCCggctctctctgtcactctgtaTACTGCGGAGGGGGGGTCTTGGGAAAAGCGTCCTGCTCTGTGTCCGGTGCCAGCTGGTAGCCCGGGGGATTGCTGGGCTGTGTTGCTGGCTGAGAGTTAGCCCCATACTGTATGACAATCACAGGCTGAGGAatgGGCTGCCATTGCACACAGCTTTGCACCCAAAGGCCGACACGGAGATGGCCACGCAGAACTCCAGGATCGAGGAAAACAGCATTACCCATGCCAAACTGCGTAAAATGTCCTGGAGAATGAAAATTACATAAGGGTGAAAAAgtgtatcattattttatcaCCAAATGCCCCAcccccaaccacacacacatatatacactctttttttttttcttataagtTTGGAATTTCGGCTCACTTCCAACATCCACGCTGCCTCGCAAGGGCAACAAAGCAGTTGTCCACCaataaactcacacacacacacacacacacctgtttaCTTATTCATGAGTAGACAACCCTATTCAGGGAAACTTATGACTTACAGtgctcataaaatatatacatgtcaCAAAGCATAttaaagcaaaagcaaacaaaaccaaagacaaTCTAAATCCTAACTGGATGTAAATTGGTAAATtggatgaaatacaaaatacaagtttaatgAAACACTAGTCTAAACGGAGATGTGTTCATAGTGACATCACCGCACGCAGTGGGCATTGTTCAGTTTTATTGCACTTCTCTGGACCTGCTGGGTGTTTTCTGTGTGACCTCCATTCCTGAGCAGGCCAGAAACATTCAACAGCAAGAAAAAACTATTATAGCAGGACTGGCCCACCCTGGTCCTGAAGGATCACTGTGGTTTCTGGATTTTGTTATATCTAAACCAACTAACTGCTTTATTGAGCATATTGTTGGGctttatttctcaaaataaagagTAATAAAGAGTGGGACAAAaagtgcaagagagagagagagagtgcaacAAAGAGTTCATACAGTGACATGATTCAGAGACCTGCTATACCTGCAGGATTATGGCTCTCAAGGAAGAGGGCTGATCACCCCTgagttaatgaaaaacaatgaggAAACCTACTCCTGAATCATGAAAACGGAAGTGTGGTACCACAACCTCAGTCAAGTCGAAAAGTATCGCTATGCCTGCAGCCACCGCACTCACAATATTCATGGACATGGCTGCCTTCAtctgcaaaggaaaataaaccacaatgcaATGGGAAACCAGGAAACTGTAGCATTTGATACTCTTCTCATTTCTCATACATCTTGGGACAGAAACTTGGGTGTATGTGCCTGTGTAGAGACATTCAGGTTGAGAATGACAGATCCAGTTTGTTATGACTGGTGGTGCTCATTCCATATAtttggaattattattttttgataagTTATTAATTGAAGTTTTGTGGGACAATCTTCCTTCTTAGCTTCCTGAAAAAGAGGGAGGCATTTCAGATACCAGGATAAACAAAGGTGtggttttcaattttttcccccacagaaTGACTGAAAATCTCAGGCCGGTCTGTACTCACGAGacagatgttatttttcttcctcttctccccCGCAATACTCACAGCCCCAGAGACAATATActagagggtgagagagagagagagagagagagagagagagatgaaatgGCAAAAGGCACTAGCATGTAGAGTCAGGTGTGCGCAGTGTCTGCCTGTGACTGCACTGCCAGGTATGGACAGTGAGAGTCAGCTGTGGCTCCAGAGGCTACAGTCAGCTGAACAAACTGCCTGAGACTATCGCCGATAAAAAGATGACCTGAACCGCTGGCTCCTCTTCATGCTGTCGTGTCATCAGTCCTGTAGAGAATAGTTTTGACACTACAAGTAGGGCACACAACATACTGACAGCTTGAATCACAACTCCTGCTGTTTCAATCTGTTGatttcacattgaaaaaaatgaCTTACTATTAGCCCTGTCCAAAATGGGAGCCCAATGACATCTGCTATAAACCTGTCTTGCAGGGTTACCACTCCTAAACCGATAGAGAAAAGGCCGATCATGATCTGGACCACCTGCTAgtgcagagagaggggaagagggcAGAGAGGAAGTGCTCAGAGCTACAACATGAGACAAATACGTGCACTTTCAATGGGCCTTCATAAGGCGGATAAGGTGGATGGTGGATAAGGACCAGAAACTAATAAAATCAGTAAAAGAAGTCTTCCCTCAATCAAGCATTCTGCTCTGCTGGTCACATGTAACACAGGCAGTTCGGAGATGGATAACAAAGAATGATTCAGAGATAAGTGGGCCGAGTTTGAAGAGGAGCGGCATAAAGTAATGGCCTTAATGTTTCAGTTGAAGCACTTCACAACAGGAAGTTTG
>TU173073
tCTGAGCATaggctaatttattttatttcttaatgaaggtttaaaagaaaagcattttttaaataaacgatatatattgtgatatatttgcAACATTGATGGAGCTGTCTGTCTTATCTCACTGAAGCGGAGAGGAAGCAGCAGGACTCTGACAGCATCGAGGGTGAGTTGTAAACAGCCGTGTGTGAAAGGCAGCTCTGAAGATGGCAGAAGAGCTCCTGcagacattcacacacagactcCAAGGCTCTTCCTCTAGAAACCCTCACTCCCCCTGCAGTGGCTGTGCAGgggaacACCGAGTCACCTGCACAGCCACTGCAGGGGGAGTGGGGGTTTCTAGAGGAAGAG
>TU173076
tCTGAGCATaggctaatttattttatttcttaatgaaggtttaaaagaaaagcattttttaaataaacgatatatattgtgatatatttgcAACATTGATGGAGCTGTCTGTCTTATCTCACTGAAGCGGAGAGGAAGCAGCAGGACTCTGACAGCATCGAGGGTGAGTTGTAAACAGCCGTGTGTGAAAGGCAGCTCTGAAGATGGCAGAAGAGCTCCTGcagacattcacacacagactcCAAGGCTCTTCCTCTAGAAACCCTCACTCCCCCTGCAGTGGCTGTGCAGGTGACTCGgtgttcccctctctccccctgtgcAGGTCCAGCCggctctctctgtcactctgtaTACTGCGGAGGGGGGGTCTTGGGAAAAGCGTCCTGCTCTGTGTCCGGTGCCAGCTGGTAGCCCGGGGGATTGCTGGGCTGTGTTGCTGGCTGAGAGTTAGCCCCATACTGTATGACAATCACAGGCTGAGGAatgGGCTGCCATTGCACACAGCTTTGCACCCAAAGGCCGACACGGAGATGGCCACGCAGAACTCCAGGATCGAGGAAAACAGCATTACCCATGCCAAACTGCGTAAAATGTCCTGGAGAATGAAAATTACATAAGGGGTTACCACTCCTAAACCGATAGAGAAAAGGCCGATCATGATCTGGACCACCTGCTAgtgcagagagaggggaagagggcAGAGAGGAAGTGCTCAGAGCTACAACATGAGACAAATACGTGCACTTTCAATGGTAAGTATAGGTAAATATGGCTGGCGTGGTTTGTGactacacagacacagtgagCTCTCACCCCCAGGGCTGTGGGCTCTCCTTTCACAAAGCGCTTCAGAGCTGCATCCCTTGGGGAGGTGAAGCCCTGTGGCAGCCCTGACTGTTGAGCACCAATGGGCACAGCGCCCGGACCCTGTGGGCACATCTGTGTGACGATCACCACGCCCCCGTTAGTGGGAACAGAGGTTAACATCTTCAACAGCTGGTCAGGGCTTCctggtaTGTAGCAAAACTGCCACAACAACATTTTTCAATACTCAACAATTCCTTGAGATGGCATAAGAAAGAATGGAGGAGAGATTCCTTACCTCTGTCTGAAAAGGCATTAAGACTAAAGCAGGCATTTTGCATGCCACTGAAGACAGGTTCATAGACCATAATTTGAAATCACTTCAAGGGAATGGATATGGATCATTTACCCATTTCAAACATGATGGACAATACAAACAGTATTTGAGTGAACGTAGTGGAATGCCCAAAGGGATGTCAAATGGTGACCCCATTGAAACGCGAGCTAATGGGTGCACAGCTTACGTTTCATTTAGCTGTGTTAACGCTGCTGTCAGTGCAACGAAAGCTGTAATTATcagaagaaaatgcaaacataCTGGACATGACAAAGACTATTGACTGTTCAGTGCTATCTTTTATTCAGATGCTCATTGCTCttggcaaaaaacaacaacaaatgaaatcCTGGTGGAAGTGGGCTGTTGATCAACAGAGCATTTTATTCTTCTCTGACCGATATTAAATATCTATCCTCCAAATATAAGGCTGAAGGAAGATTTGACAGGAATGATGCTACAGTGTGGATAGGCTCCTAAAATGTGCCAGTATCAAGAGAAATTGATCAACCCTTGATAATTGTGCTTCAGAGGAGGAAGGCTGAAGAGTATGCCAAAAACTTAGTATTCATTGACACCACATATGCtgGGCCTTCATAAGGCGGATAAGGTGGATGGTGGATAAGGACCAGAAACTAATAAAATCAGTAAAAGAAGTCTTCCCTCAATCAAGCATTCTGCTCTGCTGGTCACATGTAACACAGGTCTCCCTATCAGCACTTCCACAGCTGACATGTCGAGAGCTCAGTGCTGACTGGCAAGTACTGACTGTGGGCTCTAGTGAACAGACCCACTCCAGCAGTCTGCCAGGGTCCTGGCTGGATCTCCACATGGCTCTGCTGCCTGGCCTGATCCATCCACTGACCAGAGCTAAAGGCTGAGCAGAATCTCAGGCCGAGTTACCACGCCTAATCCGATAAAGAAAAGGCCGATCATGATCTGGACCACCTGTgagtgcagagagagggggagagggcagAGAGGAAGTGCTCAGTGATACAACATGAGACAAATATGTGCACTTTCAATGgCTCGACCGGACCCCAGAACAACACTACATGGACGGAACGTGCAACAGCGCCCACCACTCAAGGTATATGTAACTGTGCAAGGAAGACCCCCGCTCGGAGGATCTCAGCTATCTTCTTTTCCAGTGCCAGCACCAGCGCCCCGTCGGCCAGCTGGGAGCCCAACAAGACCACAGGTGCAGCTCCATGATGGTAGCCTATGGAGGGGAAAGCAGGACACACGGCAGCAGCTTCGAAACCCAGGGACGACACAAAAGCTTTTATTGTCCAGAATTACAACTTGCTGCTGCAACCGGGGTCCACTCGTGGATAAGTACTTAAAAAGAAGAACACATATCATGAAagacagcacacaaacacttttacTACCCAATTATCCTTACCTGCAGTTCCAAGTGGAGACCTGATTGGCCAGTGAGGGCTGCATGCATCACACCTACCTGtcatggtttgttttgttgctgctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173067 False 623 TUCP 0.52 2 21270360 21332070
TU173071 True 2718 TUCP 0.44 4 21270360 21276736
TU173073 False 351 lncRNA 0.46 2 21270360 21332070
TU173076 False 2640 TUCP 0.48 11 21270360 21293405

Neighbor

gene id symbol gene type direction distance location
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding upstream 103583 21148238 ~ 21166777 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding upstream 157413 21109538 ~ 21112947 (+)
AMCG00012544 sv2a,LOC107592174 coding upstream 161112 21105119 ~ 21109248 (+)
AMCG00012538 sf3b4 coding upstream 219555 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 231931 21013421 ~ 21038429 (+)
AMCG00012553 NA coding downstream 102375 21434445 ~ 21436426 (+)
AMCG00012555 NA coding downstream 106413 21438483 ~ 21443188 (+)
AMCG00012557 NA coding downstream 158779 21490849 ~ 21491478 (+)
AMCG00012560 NA coding downstream 310664 21642734 ~ 21646358 (+)
AMCG00012558 NA coding downstream 315308 21647378 ~ 21653300 (+)
G137631 LOC107575789 non-coding upstream 2448 21231980 ~ 21267912 (+)
G137634 NA non-coding upstream 49316 21220199 ~ 21221044 (+)
G137539 NA non-coding upstream 513096 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 736401 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 941536 20321606 ~ 20328824 (+)
G137669 NA non-coding downstream 269929 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 447996 21780066 ~ 21786045 (+)
G137754 NA non-coding downstream 466433 21798503 ~ 21813863 (+)
G137761 NA non-coding downstream 504172 21836242 ~ 21958354 (+)
G137814 NA non-coding downstream 673311 22005381 ~ 22005678 (+)
AMCG00012546 NA other upstream 17357 21245663 ~ 21253003 (+)
G137636 NA other upstream 39524 21224741 ~ 21230836 (+)
G137633 NA other upstream 51197 21213597 ~ 21219163 (+)
G137583 NA other upstream 211097 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 230611 20992490 ~ 21039749 (+)
G137764 NA other downstream 522636 21854706 ~ 21876542 (+)
G137775 NA other downstream 600225 21932295 ~ 21958158 (+)
G137899 NA other downstream 1233354 22565424 ~ 22566106 (+)
G137947 NA other downstream 1485883 22817953 ~ 22818458 (+)
AMCG00012579 NA other downstream 1548289 22880359 ~ 22911656 (+)

Expression


Co-expression Network