G137631 (LOC107575789)


Basic Information

Item Value
gene id G137631
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21231980 ~ 21267912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173078
tctcctctgaatcattcagatgttcattggcaaacttcagatgggcctgtacatgtgctttcttgagcagggagaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggaaacccagaccgagggagactgatagttattttgtgtttcttccatttgcgactAAtctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgatttgtttgattccttctgtggacaggtgtcttttatacaggtaacgagctgagatttggagcactccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggattttttttgttgttattctgtctctcactgttaaaatacaccaaccattaaaattata

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173078 True 709 lncRNA 0.43 3 21231980 21267912

Neighbor

gene id symbol gene type direction distance location
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding upstream 65203 21148238 ~ 21166777 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding upstream 119033 21109538 ~ 21112947 (+)
AMCG00012544 sv2a,LOC107592174 coding upstream 122732 21105119 ~ 21109248 (+)
AMCG00012538 sf3b4 coding upstream 181175 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 193551 21013421 ~ 21038429 (+)
AMCG00012549 NA coding downstream 32152 21300064 ~ 21307188 (+)
AMCG00012550 NA coding downstream 47123 21315035 ~ 21317648 (+)
AMCG00012553 NA coding downstream 166533 21434445 ~ 21436426 (+)
AMCG00012555 NA coding downstream 170571 21438483 ~ 21443188 (+)
AMCG00012557 NA coding downstream 222937 21490849 ~ 21491478 (+)
G137634 NA non-coding upstream 10936 21220199 ~ 21221044 (+)
G137539 NA non-coding upstream 474716 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 698021 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 903156 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 994107 20170426 ~ 20237873 (+)
G137645 NA non-coding downstream 40306 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 334087 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 512154 21780066 ~ 21786045 (+)
G137754 NA non-coding downstream 530591 21798503 ~ 21813863 (+)
G137761 NA non-coding downstream 568330 21836242 ~ 21958354 (+)
G137636 NA other upstream 1144 21224741 ~ 21230836 (+)
G137633 NA other upstream 12817 21213597 ~ 21219163 (+)
G137583 NA other upstream 172717 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 192231 20992490 ~ 21039749 (+)
AMCG00012523 NA other upstream 738193 20481114 ~ 20493787 (+)
G137629 NA other downstream 2448 21270360 ~ 21332070 (+)
G137644 NA other downstream 35313 21303225 ~ 21316451 (+)
G137764 NA other downstream 586794 21854706 ~ 21876542 (+)
G137775 NA other downstream 664383 21932295 ~ 21958158 (+)
G137899 NA other downstream 1297512 22565424 ~ 22566106 (+)

Expression


Co-expression Network