AMCG00012623


Basic Information

Item Value
gene id AMCG00012623
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 281594 ~ 298125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012623
AACAACGAGAACGAGACGGCTCTGCACTGTGCCGCCCAGTACGGCCACTCGGAGGTGGTGGGGGTTCTGCTGGAGGAGCTGACTGACCCCACAATGAGGAACAACAAGAGTGAGACTCCCTTGGACCTGGCAGCGCTGTACGGCCGGCTTCAGGTGGTCAAGATGCTTGTGAATGCCCACCCCAACCTCATGAGTTGCAACACCAAGAAGCACACCCCCCTGCACCTGGCTGCGCGCAACGGGCACAAGGCAGCTGTTGAGGTGCTCCTGGAGGCGGGCATGGACTTCAACTGCCAGaCGGAGAAAGGGAGTGCACTACATGAGGCAGCCCTGTTTGGGAAGATGGATGTTGTGCGGATTCTGCTGGAGACAGGAATTGATGCCAATTTAATGGACTGCCAAGGACGAACTGCCCTGGATATACTGAAGGAGCACCCAGCACAGAAATCACAGCAAATCACAGCGCTCATTCAAGAGTACATGGCAGAaaagctggagagagagattgtggaGGAGCCGGTCAGACAGTGTCCGGTCCCGACGCCCCGCACCTCCGTCTCCTCCCCTGCCGCCTCGCCATCCCATAAAACCAAAAATGAAACGGTGACAGGAGAGCTgtcaaaattattaaatgaaatcaaaatgtgcAAAGACAAAGAGTTCTCCTTTGAAGATCTGTGCCAAACGATCTCGTCGCACTCAATGGAGAGCTTTGGCAGTGGCAAGCTGTCGGATGAAGACAGGAATGGCAGTCTGACAAAGACAAACAAGCAATAA

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012623 True 777 mRNA 0.54 6 281594 298125

Neighbor

gene id symbol gene type direction distance location
AMCG00012626 NA coding downstream 85993 152662 ~ 195601 (-)
AMCG00012625 NA coding downstream 133489 124039 ~ 148105 (-)
AMCG00012621 NA coding downstream 266185 8500 ~ 15409 (-)
AMCG00012624 NA coding upstream 122108 420233 ~ 450576 (-)
AMCG00012632 NA coding upstream 259704 557829 ~ 574372 (-)
AMCG00012631 NA coding upstream 291102 589227 ~ 590653 (-)
AMCG00012630 NA coding upstream 301730 599855 ~ 613207 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 447210 745335 ~ 751549 (-)
G38305 NA non-coding upstream 298483 596608 ~ 596818 (-)
G38355 NA non-coding upstream 538986 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1586504 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1602635 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1696722 1994847 ~ 1995063 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other upstream 216097 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 1280830 1578955 ~ 1817200 (-)
G38458 NA other upstream 1478729 1776854 ~ 1777221 (-)
G38490 NA other upstream 1885760 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5754239 6052364 ~ 6063817 (-)

Expression


Co-expression Network