AMCG00012624


Basic Information

Item Value
gene id AMCG00012624
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 420233 ~ 450576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012624
AGCATTTGAACATTACCTGTGATATTGTTCTCTCCAGCATTAGCTTTAAACTCTTTCAAACTACCCCTCTGTCTCTTGTATCTTGATACAGGTTTGCTAAGAACCTGTCCCCCGACAAGATCAACCTGAGCACACTGAAAGGAGAGGGGCAATTGACCAACCTGGAGCTGGATGAAGAGGTTCTGCAGAATATGCTGGACCTGCCCACCTGGCTGGCCATCAACAAGGTTTTTTGTAACAAGGCTGTCATACGGATCCCATGGACAAAGCTGAAGACTCACCCCATCTCcctgTACCTTGATAAAGTCGTGATGGAAATGAGCACCTGTGAGGAGCCAAGGTCACCCAATGGGCCTTCCCCTATAGCCACAGCTTCTGGTCAAAGCGAATATGGCTTTGCAGAGAAGGTGGTGGAAGGCATCTCTCTTTCGGTCAACTCCATTGTCATCCGAATCAAAGCGAAGGCCTTCAACGCCTCCTTCGAGCTGTCCCAGCTGAAGGTGTACAGCGTGAACACCAGCTGGCAACTGAGCGACCTGAGATTCACCCGGATACAGGACCCTCAGCGTGGGGAGATTTTGACATTCAAAGAAATCAGCTGGCAGATGATCAGGATAGAGGCGGACGCTATTCAAAGCGGAGATCATGAAATCCTGAGCGCCCCGGTGCGACTGATCACCAATCagtccaaaatcaaggtcacgCTCAAGAGGCGGATGAAAGATTGCAACGTGGTGGCATCTAAGCTGATCCTGTTCTTGGATGACTTGCTCTGGGTGTTGACCGACTCCCAGTTGAAGGCCATGGTCCAGTACGCCAAGTCTCTGAGCGAAGTCATGGAGAAGTCGGCCCAGCAGAGAAAGAGCATGGCTTCGGAGTCTAATCAGAACCCAGCCCCGGCCCCCACATCCCAGCAGGTGCGCACCCAGCAGACCGCTGCAGCCGCTGACCAGAATGCCACCAACGCCAAGCTCTTCAGCTCTTATGACGTCCAAGAGACCTCTCACCACCTGCAGATCAAGCACCTGGACCTGCACATCTGTGATGACATCCATTCCAAGGACAGAGGAATAGACAAGAGAATCACTGGTGGGGCAATGCAGCTGTCTTTCAGTGAGATAGCAGTGGATTACTATCCTTTTCACAGAGCAgGTGAGAGCTGTGCACACTGGCTGCACTATAGCGAGGCAACGAAATCTAGGGAGACCTGGGCCAAGAGCCTGCTGGAAGAGTTCCGGGCCAACGTGGAGATGCTGAAGAACGCTTTGAAAGACCAGCGCATTGCTGCCAGTGTCCCGGCTTCCTCCCCTCCCCACAGCTCGCCACAGCATGCCCCCGCAGGAAAGATCTCCACAACGTCAACCAGTACTTTCTCTACTCCCAGCCAGCCACCCAGGACTCAGTTAATGTCCAGCTCTATTGTGTTGAGGATGGCAGACTTCAGTATCTATCAGGTCTCGACAGCAGAGCAGAGACGCTCCAGCCCCAAATCAATGATCTCCTGCAACAAGAAGGTTCTCTATCTGCCACAAGAGATGCCTGCCATTCATATAGAATTCACCGAATACTACTTTCCTGATGGGAAAGACTACCCGATCCCCTGCCCTAACCTGTATGTGCAGCTCAATGCTCTGCAGTTGGTCCTGGATAGCAAAAGCATGGTGTGGCTCAACCAGTTTGTTCTGGACCTGATGCAGAGCTTGGAGCAGTTCATGACCCTCTACAAACTGGATGACAGCGAGAAACCTGATGAGCACATTGATATCAGAATGGATGGGCTGATGTTAAAGctGGTCATTCCTACAGAAAAGGAGCTTAAGGGACACCCTGACCTCCCGCGCTCCATTTCCATTCAGACGTCGGAGATGGTTGCCAGCAACACCAGGCATTCCTCCAAGTGCTCACGCTCTAGCCTGGAGGCCGTGCTGCAGGACTTCAAAGAGCACCAGTTCTTCAGCAAAGCGTTCACCTCCTTCCCCAAATCCCCCGATGGCTTCAACATCCTGCACCCAGTCTTCCAGAGGCATGCCCATGAGCAGGACACCAAAATGCACGACATCTACAAGGGCTACGTCACCCCCACCCTGAGCACCAACGCGCTCAAGACCTCCGCTGCTACCGACCTGTGGGCCATCCACTTCTCCCAGTTTTGGATCGACTACGAGGGAATGAAGAGCGGCAGGGGCCGGCCCATGCCCTTTGTGGACTCCTTCCCTCTTTCCATCTGGGTCTGCCAGCCTGCCAGGTATGCCCAGTCCCAGGAGCACCTGTACTCCGCCAGCCGCCCAGGCTTTGGCATTCCCAAGAGCGAGTCGGCAGAGCTGACCAGCCGCCTGCAGCGCAAGAGACTCCTGAAGGATTACTATGGCGCAGACTCCGATTCAGTCACCAACGGGATCCGGAAGCCCCACTCCCTGGACAGTACCCCCCTGTCCTCCGAATCGACCTCCCCTCCTGCGGAAGCAGATCTTCAAGCGCTGATCCACATCCAGAAACACCTGAGCCTGCAGATCAACCATTACCAGTATGTGTTCCTGCTGCGCCTCCAGCAGTCCATCAAATCCCTTCAGCAGACCATGCAAGAGGACATTGCCCGATCCACCACCAAGCACACGGAACACGCCGGCCACAGCAACGTCTGTGTGGGGGTGCTGCTGAAAAGCGCAGAGCTGGCCCTCCTGCTCCATCCACTCCCCACCCCTGAGACAGGAACCAAGTCTCCAGTTTCCGACAACGTCAGCCAGATAGGCTCCGATATCTCCCCCTCAGAGAGCAGAGGGAATCTGGAATCTGGCAGCGAGACCTTTGTGGGCCCAGAAGAAGTGGTGGCCCCAGTCCTCTGTTGCACCGCTTCTGTAGATGACTTGCTGTGCAATCCGTGTGGCAACGGCTCTGCACAAGAACCTGTGCCCCTCCAGCCCACCTTGGATTATATCCCAAAAGGCCCCATCGAGAAGCCCAATGCAGAGGACGGCGCAGTAGCATCTGGGAGGAGGGCAAGCTCGGAAGAGAAAAGGGACTGCATGAAGCCCTCAGAATTCCTTGTGGACCCCTTCTCCATCGGGGGTCAGAACCAAGAGCAGTTGAGCAGCCTCACTGATTGTAAAGCCCTTCAAGACGAGCTTCCGACAGCTGTCAACAGCAGAAAGCCCGGGGCCGGAGACTCTTTCTCCGAACCCGGTGCCTCCAAACCCGATGCGGCCTTACCCTCCAGAGACTGGAATGGTGGCCGAGAGAAAACTCCAGGGGCCAGGATGCCTCAGTCAATGTCAAGtgGCAGGCTGATCAAAGAGAGATCCCAATCCAGCTTTTCCGTATCCTACAAGAATCTGAAGAAAAGTCCGTCTTTGCATTCCCTGGACAACATCTCCATTGACAGCAATCTACTGGAAGAGCACATGTTGGAGAGTGACGGCAGCGACAGCTTCATTCTCACTGACAAAGatggGATTTCTGAAGATCTGTCAATGGCTGGTTTTAAAGATGACCAGAGTCTGGCGGAAAGTGCGACTGATGCTCTGGGACAGGAGAATGACGGGGGCATGTCACCAGATGCTGTCAGCGCTGCTTCTCAGAGCATAGAAGAGACCAATAAGGATTTGGTGTCTGTGGTGGTTTTTAAGATATTTGGTGCTCACTGCGGCCTAGACATGAAGGGGGACAGTGCAGCCGTGTACCTGCAGATCAATGAGTTGATTCCACACCAGCTGGGCAATGTCAACTTCAGACAGTACATCAGCAACCCCAGCATGGGTTCAGCTTCTGCTGCAGCCTCTGGCCCCAGGAAGTCCACTCCAGAGGTCAAAGTGCGTCTGGAGAGTGGCCCCAGAGCTTCGGCCCACTCCCCCCTGGCGGCACAGAACGGCTTCCTATGCTGTGAGGTGGACCACTTCACCTCCgacttcctcctctcctccctccgtAACCTGGGCCGCTTCGTGGAGGACGACTCGGTCTCTCAGGTGCTTCCCATGAAGGTCACCATTTCTGACACCCGCATTAATTTGAAAGACGATGGACCTCGTCAGAACCCCTTGGACCCTGAGCCAGCACCTATCACCCTGCTCATTAACGGGCTGCTGATTCAGAGGAGAGACGACGGCTCCTTCTCCATAGGGGGTGAGCAAACATATGGGCCAGGAATGAAAGCAGAAGCCAGGGCTGAAGACTTGAGTAAGGTGGGCCATGTTCCAGAGACTCGAAACCGAGCGAGCAGCATGTCGCAGGCCACTCAGACGCTTCCAGAAAAGCCATCCCCTCCAGCTCAGACCCCAAAACTGTCTCCGAGCAATGCTGTCAACACTGCAACCCTAGGCAATAAACAGctaattGAAGAAAATGAGTGTTTGAAGCTGGAACTTTCCAAAGCCAAAATGGCTCTTGCGGAGGCTCAGATGGAGAAAGACAGCTTACTTCACAAAATCAAAAATCTGACAACCAGCAGCTAACTCCAAGTGGATGAGCTTCAGGACCAAGAAGagaaactgtgaaaaaataaatggcactTTCCTCTAACAGGCCTCGAGGGGCCCATCATTGCAGCGGAATATTATGAGAAGCAGTGAACAAAAGAGATATTTGAATTGTGCAATTCTTAATGGAAAGAGGAAGTACGTACAGCAGGGTCTCATGAAatagtattatttgtattggtttaggttttttttttttttttcttgcattttccaGTTAAATAATGACAggtgaatataatgttgttgaAAATTTTGAGCaacactaaaaaaataaagtaaagcgATGCAGTGAATTCTTAAATAGGGGAGAAGCACACAAGACCAATTATGCACTGGCTTGAGCTCGGTGTGTGTTAAGAATGTCAAATGATTTGTAATATCTTGAGACAATTTGCACTGTCCTTAAACTCATCATGTATTTAATACTGACAAAAAAGTatttagcttttaaaatgttcatcaAAATGTGTGTAAGAATGTTTTATAAAGAGATTTTCGAATGCTAGgcagtgtttttgtgtgggGGTTTTgaggaaaaaattataatttagttatAACAGACATTTCATTACTTGATTATGTTAAACTATTCAGACTGACACGAACATAAAAGCAAtggattttctatttttctagGTGTGTATATACCCATTCATAAATTTATCGGCATAGTACTTTTTGTATGTATAACTGTAAATAAGACACCTATGTTAAATGATGAGCCTTGCATTAGAGGACAGATTAAGCAGATTGGTTGTCTGGTCATTTTGttgtaaatgtgtatatatatatatatatacatgttttttttctgcaagaGAGGTTTCATGTGCATATATTTCGCCGTTCAATATTTTCTGCCGGTTTGTGAAGAGTAATAGAATTCATTGCAGGttagcatttcattttgaatacagTGAGGGTTGTCtttttgtatactgtacatgcaggatgttgctgatgtttttttgttatgtagAGAATTTAGACACTGACCATAGTTTACATATTAACATCATGTATGTCCTGTATTTGTACAGTGAAATATCTTTTAATAGTGTTAATTTCTTTCAACAAATAAAGCATTATGGTGGATTTGATTTTAGCTGAATCTCACCTTGGATTTACAGTTTTTAGTATTATGCTTTTGACAATGAACCTAACTGCCCTTAGAAAAGTTACTCTGAAATTCGATTGGTGCTCATAACTATATATTAAGACAAAAGTCTCCTCACTGTGAAGGTTTACTGGCTCATTTTGTGATTATCCTGTACTCTATTACACACAAATGGGCTTACTGCAAAATGTGCGACTCCCAAAGCCTCAAGGAAAAGGAAGACTTACAAAACCTCTTAACTGTCAATATTTATATGGAGGATCCATTGTGTTGAACAGCATGCGCCTGAATGttcctgtcatttttatttattttacaaatgcatcTTGCATTGATTAAGGTTTTCACGTGTCTGGAATAGTACAGAGATGCCAGTTTGTACCTTGGTTGTTCTAGAGCCATAGTTGAGAACTAGTCGGTCTTGGAGAATTGCCACCTTCAGTTAAGGGTGAAATCCCATTGTTAAAGCCCACTTGCGCTTATTCCTGTAAACGTGAAGGCAAGAATGGTTCAGTCTTCACCAAAGGGATGATGTCATACAAGCCTTCTCAAGTGCCTCTGCTCTTCTACTGTCCAAATAGGAATCTTAACCATGTTGGTTTCAcgaaaactaaaatgaaaatgaatgtctaGTGAACCTACTATTTGGAACTTTATTTTGggtcttttttttcattgtttgttttttttttttacaaaacatttagatTCTAAAAAGGTAAGCCTCTCGCTTACATTCAGATTGGGGGAACTTGATTGTATAAAAGACTATAAATGTCTTcgacctcctctctctgtcctacAACTTAATCTGTGTGTACTGTCTCCTCTGACAAATTAGAGAAGAAAATCTTGTAATATGTAATTACTTGTCTGTTAAAGCTGcttaaatactgtaaaataaagaggaaacaaatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012624 True 6512 mRNA 0.48 20 420233 450576

Neighbor

gene id symbol gene type direction distance location
AMCG00012623 NA coding downstream 122108 281594 ~ 298125 (-)
AMCG00012626 NA coding downstream 224632 152662 ~ 195601 (-)
AMCG00012625 NA coding downstream 272128 124039 ~ 148105 (-)
AMCG00012621 NA coding downstream 404824 8500 ~ 15409 (-)
AMCG00012632 NA coding upstream 107253 557829 ~ 574372 (-)
AMCG00012631 NA coding upstream 138651 589227 ~ 590653 (-)
AMCG00012630 NA coding upstream 149279 599855 ~ 613207 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 294759 745335 ~ 751549 (-)
AMCG00012637 NA coding upstream 316429 767005 ~ 792382 (-)
G38305 NA non-coding upstream 146032 596608 ~ 596818 (-)
G38355 NA non-coding upstream 386535 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1434053 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1450184 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1544271 1994847 ~ 1995063 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other upstream 63646 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 1128379 1578955 ~ 1817200 (-)
G38458 NA other upstream 1326278 1776854 ~ 1777221 (-)
G38490 NA other upstream 1733309 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5601788 6052364 ~ 6063817 (-)

Expression


Co-expression Network