AMCG00012628 (golt1b,LOC108428784,LOC107676462,LOC107701063)


Basic Information

Item Value
gene id AMCG00012628
gene name golt1b,LOC108428784,LOC107676462,LOC107701063
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 514222 ~ 539591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012628
ATGGAGAGCCAACaaATCGGAATGGGACTAACAGGCTTTggtgtgtttttcctgtttttcgGAATGATCCTGTTCTTTGACAAAGCTCTCCTAGCTATAGGAAATATCTTGTTTGTGGCAGGCCTGTCCTTTGTCATCGGACTGGAGAGGACCTTTAGGTTCTTCTTCCAGAAACACAAGATGAAAGCTACTGGCTTCTTCCTGGGTGGTGTGTTCATTGTGCTGATTGGCTGGCCCATGGTTGGGATGGTGCTGGAGATCTATGGATTCTTCCTTTTGTTCCGGTCTTGA
>TU47757
CCGGAAGACGTGGCGGCTGCAACAACAGCAAGCTGCTTTCGGAAGAGAGTTGGGCTTTCTTTAAGTGTGGACAGTTGTTGCCTGTGTAGTTTTTGGTCAATCCACTACTGCAAAAATGATCTCCCTAACGGATTCACAGAaaATCGGAATGGGACTAACAGGCTTTggtgtgtttttcctgtttttcgGAATGATCCTGTTCTTTGACAAAGCTCTCCTAGCTATAGGAAATATCTTGTTTGTGGCAGGCCTGTCCTTTGTCATCGGACTGGAGAGGACCTTTAGGTTCTTCTTCCAGAAACACAAGATGAAAGCTACTGGCTTCTTCCTGGGTGGTGTGTTCATTGTGCTGATTGGCTGGCCCATGGTTGGGATGGTGCTGGAGATCTATGGATTCTTCCTTTTGTTCCGGGGGTTCTTTCCTGTGGCTGTTGGGTTCATCAGAAGAATTCCAGTTCTTGGATCATTATTGAATTTGCCAGGAATCAGAGGGtttgtgGATAAAGTTGGAGAGAGCAACAACATGGTATAACAGTGacttcaagttttttttttttttttttttttttttttttttttttttaatcgctttattatatttataaggGTTTCCTAAAGTTACTTTACCCCCCACTTTACCCTGTCTGATGTTACTAATGAGGTAAAtccaggaaatatattttacctttgttttcaatttttaaaacaaatcaaatctgctttatttatttcttctttgatCCATGTTGCAAAAATCAAGAAGAAGCCGGGAAAGACTACATCGTGTCAGCTTTTGTAGTGCAGCGGGTGGAAGTTCTCCAGTCTCAAATAATCAGGGGGACATAGTTACTTTAATGGAGCTTAAATAGCACAATGCGCAGACAGTGTATACTGTTACAAGATCCTTTGCTATATGTGTCCTttctaaacatacattttttgtggAAGATATAGTCTCTGAAAGAATTAAATGTACCAGGCTGATCCTATGAGTTAGAAGTTCCTCGGAATGCAGTTTCTGAAAGCTTCCGTCAACCATTTCACTTTATGCCGTTGTACCAAGCTTTCATTTGGAGATAATGGCATTGTGGGTTCTGTTACAAAGATAATCGGCTGTGCTACATTAATGTGCCTGGACGTTTGCTTTCCTTTGGAGAAAGCTTAAGTGCTGTAAaagaaatttatattttatttagttttgttttttttttgtttagttttgttctggaAAACTaaaaggccaaaaaaaaaatgaatgaaagaaaaaaaaaaaaaatactccttTGTATTAGAACCTTCAATGTATCTAGTGGCGTAAGGAGGTTGGactgcattatattatttttaaaagtaaaattttTCAGTCACTTTTACCTGTGTAAAGTATTGAagacaaaaatcaacaacaatttAACAAAGTATAATGTTTTGCTGTAAGAAActtttgtaaatacacatttgaaatacGAAACttgttatgtgttttttaagaCAATCCCAATAAACACTACTGTGGCCTGAG
>TU47758
CCGGAAGACGTGGCGGCTGCAACAACAGCAAGCTGCTTTCGGAAGAGAGTTGGGCTTTCTTTAAGTGTGGACAGTTGTTGCCTGTGTAGTTTTTGGTCAATCCACTACTGCAAAAATGATCTCCCTAACGGATTCACAGAaaATCGGAATGGGACTAACAGGCTTTggtgtgtttttcctgtttttcgGAATGATCCTGTTCTTTGACAAAGCTCTCCTAGCTATAGGAAATGGGGTTCTTTCCTGTGGCTGTTGGGTTCATCAGAAGAATTCCAGTTCTTGGATCATTATTGAATTTGCCAGGAATCAGAGGGtttgtgGATAAAGTTGGAGAGAGCAACAACATGGTATAACAGTGacttcaagttttttttttttttttttttttttttttttttttttttaatcgctttattatatttataaggGTTTCCTAAAGTTACTTTACCCCCCACTTTACCCTGTCTGATGTTACTAATGAGGTAAAtccaggaaatatattttacctttgttttcaatttttaaaacaaatcaaatctgctttatttatttcttctttgatCCATGTTGCAAAAATCAAGAAGAAGCCGGGAAAGACTACATCGTGTCAGCTTTTGTAGTGCAGCGGGTGGAAGTTCTCCAGTCTCAAATAATCAGGGGGACATAGTTACTTTAATGGAGCTTAAATAGCACAATGCGCAGACAGTGTATACTGTTACAAGATCCTTTGCTATATGTGTCCTttctaaacatacattttttgtggAAGATATAGTCTCTGAAAGAATTAAATGTACCAGGCTGATCCTATGAGTTAGAAGTTCCTCGGAATGCAGTTTCTGAAAGCTTCCGTCAACCATTTCACTTTATGCCGTTGTACCAAGCTTTCATTTGGAGATAATGGCATTGTGGGTTCTGTTACAAAGATAATCGGCTGTGCTACATTAATGTGCCTGGACGTTTGCTTTCCTTTGGAGAAAGCTTAAGTGCTGTAAaagaaatttatattttatttagttttgttttttttttgtttagttttgttctggaAAACTaaaaggccaaaaaaaaaatgaatgaaagaaaaaaaaaaaaaatactccttTGTATTAGAACCTTCAATGTATCTAGTGGCGTAAGGAGGTTGGactgcattatattatttttaaaagtaaaattttTCAGTCACTTTTACCTGTGTAAAGTATTGAagacaaaaatcaacaacaatttAACAAAGTATAATGTTTTGCTGTAAGAAActtttgtaaatacacatttgaaatacGAAACttgttatgtgttttttaagaCAATCCCAATAAACACTACTGTGGCCTGAG

Function

symbol description
golt1b Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Located in endoplasmic reticulum. Part of protein-containing complex.

NR:

description
PREDICTED: vesicle transport protein GOT1B isoform X1

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012628 False 291 mRNA 0.46 4 514222 538806
TU47757 True 1522 TUCP 0.37 5 523747 539591
TU47758 False 1343 lncRNA 0.35 4 523747 539591

Neighbor

gene id symbol gene type direction distance location
AMCG00012624 NA coding downstream 63646 420233 ~ 450576 (-)
AMCG00012623 NA coding downstream 216097 281594 ~ 298125 (-)
AMCG00012626 NA coding downstream 318621 152662 ~ 195601 (-)
AMCG00012625 NA coding downstream 366117 124039 ~ 148105 (-)
AMCG00012621 NA coding downstream 498813 8500 ~ 15409 (-)
AMCG00012632 NA coding upstream 18238 557829 ~ 574372 (-)
AMCG00012631 NA coding upstream 49636 589227 ~ 590653 (-)
AMCG00012630 NA coding upstream 60264 599855 ~ 613207 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 205744 745335 ~ 751549 (-)
AMCG00012637 NA coding upstream 227414 767005 ~ 792382 (-)
G38305 NA non-coding upstream 57017 596608 ~ 596818 (-)
G38355 NA non-coding upstream 297520 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1345038 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1361169 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1455256 1994847 ~ 1995063 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 1039364 1578955 ~ 1817200 (-)
G38458 NA other upstream 1237263 1776854 ~ 1777221 (-)
G38490 NA other upstream 1644294 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5512773 6052364 ~ 6063817 (-)
G39487 NA other upstream 5916130 6455721 ~ 6456178 (-)

Expression


Co-expression Network