AMCG00012630


Basic Information

Item Value
gene id AMCG00012630
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 599855 ~ 613207 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012630
GATTTATCTGGGGGGTATTTAAATTAgacaacagggtcatgggcaccaattttaaattttaattagaaatatcTACTTCCTAATAGATTTTGGAATGATTGTCAAtgctataaaaaatGTACAAAAGCACACTGTGGCTCACAGAGACCAACAAAGCAACCTAGACTCTAACACAGGCACCATGACTGCAGAGAGCAGACCTAAGGACTTTACTGAGCCTCCATCCATGACAGACAGTGTAAAAGAGTCAGGACCATCAGGAACAAGAAAATGCTGCACTCCTACTCTGAAGaTGTTCTTGGCAGCTCTGGCTTTCTCATTCTTTTCCAAAACCTTATCTGGGAGCTACACCAAGAGCACAATCACCCAGATAGAAAGGAGATTTGAGATCTCAAGTTCAGTTGTTGGGATTATTGATGGGGGATTTGAAATGGgtaATCTATTAGTGATAACTGTTGTGAGCTACTTTGGAGCCAAATATCACAGACCAAAACTAATTGGGGCAGGGTGCCTGCTAATGTCCCTTGGAACATTTCTCATGGCGATGCCACATTTTTTCATGGGACGCTACGACTATGAGACTGTGGCATCTACCTCCCTTGACTCCAATATGACAATGCTCGCCCCATGTTCAAAGAGCTCCAGCCAACTTTTGAAGGAGGACATTATACCGCAGTCAATACCAGGGTGTATTCATACCATTGCTGTGATCGGGCCTCTGTTCGGATTTACATTGGGCTCCTTCTGTGCCGGGCTATACGTGGACATTGGCTTTGTCAACCTAGaCGCTGTGACGATAACTCCAAAGGATGCCCGCTGGGTTGGGGCTTGGTGGCTGGGGTTCATAGTGGCTGGGGGCCTCAGTCTGGTGACTGCGCTGCCCTTTTGCTTCCTGCCCAGCTCCCTGCCAGAggagcagcagaagaaaaaggagCACAGCATCTCTTCAGAAAACCTCCATATCCAACCCTCTGCAGAACCCAAACCCAGTTTAGCAGAAATTGCTAAAGACTTTGGGCCCTCTTTGAAGCGTTTGCTTACCAACAAGATTTTCTTCCTGATTCTGGTTACCAACATCCTCATCTTCAATGCTTTCATCATCTTGATAACATTCACACCCAAGTTCCTGGAGCAGCAGTTCGGACAGAGTGCATCAACTGCTAACTTTCTAATAGggGTTACATGCATGCCAGCAGTGTCTCTTGGGATTTTCTTCAGTGGATACATCATGAAAAGATTTAAACTGGACATGCTGGGAGCTGTCAGGGTGTCGTTCTGTGCATCCATATGTGGCTGTCTCTGCACATTGCCCTTCTTCGCTCTCAGCTGCAAAAACCTGGACATTGCAGGGTTGACTGTCTCATACGATGGTTCAATTTCAATCGATGGTCAGGAGCGTAGCTTGCTCTCTACCTGTAATTTAGACTGCAGCTGTTCCCTCTCCCAGTGGGACCCCGTTTGTGGAGAGAATGGAGTCACCTACATTTCTCCATGTTTTGCTGGCTGTAACTCCACCAGTGGAATTGGAAAAAACACGACGTTCCATGGTTGCAGCTGTCTTAAAAGTTCCAGATTGGATACAGGGAAGTCCTCTGCAGTTCTGGGACAGTGTGCCAGAGAGGAAAAGTGTTCTACAATGCTTTATATCTTCTTGGCACTACATTCATtgagtttttttatattttctctggGAAGCACTCCTCTATATATCATACTCCTCAGGTGTGTTGAACCAGAACTGAAGTCGCTTTCTGTTGGAGTTTTCATGTTGTTATTAAGGATGCTTGGTGGGATTACAGCTCCAATTTATTTTGGAGCCCTGATTGATGCAACATGTCTGAAATGGGGCAGTAGAAAGTGTGGAGGGAAAGGAGCATGCAGGATGTACAACATTGAGACTTTCAGGTTCCTCTTCCTGGGCTTGATCTTGAGTCTTCGTCTAGCTGGGTACATCTTTTTTTGGATCTTAAACATTCAGATAAAGAAGAAATTGCGAAACGACAAAAAAGCTGCTGAAGGACTGGagttaaatgtaaaacagaactCTTAACAATAGTCTGGACACAGAGGGTAAAGGTAACCTCCCACACTAGCAATCACAAACAGAGAGACATTACCAAAGGACTGTCTTAGAAGCCCCGTTTATTGAATCACAACAAGAGTTTCTATGAaggcaaatatatttttcaactttttcaAAGAAAAGCTGTGAAGGATGGATAATATAATTCTGTATTTGCTATTTGGTATCTCAGAAAGAAGACTGAATACTTAattgcacaaaaaaaataataatcacaatttaCTGTGCATTGGCTTGAATGAACAAATcacagtttattgtgtttttggaGAATCAATAAGTTTGCAATCTGCTTTCttttacttacattttacaGCCTTGGCTCAGCCAGCAACATTCTATCCTTCTTTGCCATACCAATTACTGTttggcatttaattaaattgctgtCAATGCATCTATTTATCCCAGTTACCACAGAAACACCATTTAGATAAACAGAGCAATCAACCAGCAGTGCCCACACTAGATGGCAGTAGAAGAACAATTACCTTTTTCCCTGTGGAttcatttcctttttagttGCAGAAGAACTGTCAGATCTTAAGAGTTGCTTTGTGGGGCTATACTGTTACCAGATTAAGTGAAATATGTATCTTGTAATTGCCCAGCAACATCAGTCACGTCTCCCACAACTTTCCACTTTGAAATCACAGATCCAGCAATGAATTTACCTATTTATCTCAAATACTCCCTGAACTAAACAATGCACCTTGATGTTACATGGAATTAATGTCAAGGGGatccaaaaaatatattgcagactGTTAGTTTTACTGTTACAACTGGAAAGGAACTTAAAATCCATGTCTAGAAAGGAATCAGTGAATGACAGTGATCaaggaatgaaaataaaagacttGGAAGTCTCTTAGTTCAGTagacattttgttatatataactGAGttgaatgcattaaacaaatgcattgttgCCTTTGTATCCAGTTGCAAATGTGTACAACAGTTCCTTCCCTTATTTAAAGCACACACCTACAGCCATACAGAGATACAGAAAGTGGGCTACTGTGTGAACCAGCTGGCTGCTTGGCAAAATGCAActgtaacacatttttgtatgacAACCATTTAAAGAGTTGTACAAAGAAATGCCCCAtggcacaaaaaataaacaatttctcattttgtttctgtttaatgGTTTGGGCTTACTGGTTGACTTTTTTGTACTTGGCGGTATTGAGCACTTGCATGCCAGTCTGATGTGAAATTGTCAAGCAGCACAAATTGTATTTGGCCCTGTAGTGTTAAAtagaaaaagtaatttgtttctaCCACCATGCCACCTTGCTACCTGTACTCCTTTTCCCTTTCATTTCAAACATACCCCTTCAACTGATGGTGCAAAACATGCCCCAGAAATTCACTGATTCAGCTTCTGTTGAAAAGGAACAGGTAACAGTATATGTTCCACCCTTTAAATCATACTTCAaggaaataatgataatttgtatttaattgtattaggAGGAAACTGTGATATTATCATTATTCCTTTTTCCTCCCTACTAACTTGATCTGACATTAtccaaatttattttttgttgagtTCAGTTTATAAATTATTCTGCAGTAATTGGGGGCAAGTTTTAGCTCCAGTAATCTGTAACACAGGTAGGGTATTCAAGTTAGGTATCACCAATAAAAGggttacattaaacaaatgctaccataaaatattgaatattttacaAGTCAAAGGTTTAGTGAGACACCAAAGCGTTAATGGGCTGTCCGAATTCTAGAAACAGTAAAGAGAGATTCCCAGAACAATATAACAGATTTGTTAATTAACTCTGctgcctgtttttattttgtgttatgtgGTGAGGGATCAAGGGAGAAACAATGtctgtcatttaaatgtaaacaggTGCATTGTTCATACtgtctg

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012630 True 3997 mRNA 0.40 14 599855 613207

Neighbor

gene id symbol gene type direction distance location
AMCG00012631 NA coding downstream 9202 589227 ~ 590653 (-)
AMCG00012632 NA coding downstream 25483 557829 ~ 574372 (-)
AMCG00012624 NA coding downstream 149279 420233 ~ 450576 (-)
AMCG00012623 NA coding downstream 301730 281594 ~ 298125 (-)
AMCG00012626 NA coding downstream 404254 152662 ~ 195601 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 132128 745335 ~ 751549 (-)
AMCG00012637 NA coding upstream 153798 767005 ~ 792382 (-)
AMCG00012638 NA coding upstream 186852 800059 ~ 816537 (-)
AMCG00012636 NA coding upstream 252924 866131 ~ 893617 (-)
AMCG00012635 pde3a coding upstream 301228 914435 ~ 920125 (-)
G38305 NA non-coding downstream 3037 596608 ~ 596818 (-)
G38355 NA non-coding upstream 223904 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1271422 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1287553 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1381640 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 1418630 2031837 ~ 2032211 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 60264 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 965748 1578955 ~ 1817200 (-)
G38458 NA other upstream 1163647 1776854 ~ 1777221 (-)
G38490 NA other upstream 1570678 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5439157 6052364 ~ 6063817 (-)
G39487 NA other upstream 5842514 6455721 ~ 6456178 (-)

Expression


Co-expression Network