AMCG00012632


Basic Information

Item Value
gene id AMCG00012632
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 557829 ~ 574372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012632
CTTGCCTCACAGTTTCCATCAGATAGGATTTTGCTGCTGACTGCCTCTAATTTGATTAAGGCAGTGACAAATTATAAACAGGTCTCTAAAACGCTAGAAGATTTTGATGTTGAAGAGCAGCCCTGCAGTTTCTTGGAAGAAAAGTACCCAAACATTAAAAGGGTGCTGACAGAGAACGGCCAATGGTTTGATTATgagaagctgtgtgtgtgtgctgggggcAGGCCAAAGCTCATCGCCAGAGACAACCCGAATGTGCTGGGAATCCGGGACACTGACAGCGCTCAGGAGTTTCAGAAGCGGTTGTGTTCGGCGCAACGGATAGCTGTGGTGGGGAATGGAGGGATAGCGCTGGAGCTTGTCTATGAAATCGAAGGCTGTGAAGTTATCTGGGCTATAAAAGACAAAGCGATCGGGAATACCTTCTTTGATGCCGGAGCCGCTCAGTTCCTGATTCCTGCACTCGAGGCTTTGAAGCCTGAGAGACCAGCCTCCTGCAGGAGAACCAAGTACACCACTGAAGATCAAGAAAAGGAAGAGAAGAGCTCAGCCCAAGCTGGAGAACTGGGCAGTGCCCTGGGGCCTGACTGGCACGAAGGACTGAAACTCAAAGGCACACAAGAGGTGTCACACAAAGTCCATGTGGAGTACCAGTGTGAAGTGAAGGGAATCTACACGCCGGAGGAGTTCCTGAAGTCTCAGCTCACAGCCCTGCAGTTTCCAGAGCACAACTCGGATAAGCTCAAACCACAGACCGATACAGCCAAGGTGTGGCCGGTCTACGTGGAGCTGTCAAACGGGAGGACCTTCGGCTGTGACTTTATTGTCAGTGCCACAGGAGTCATTCCAAATACTGAACCAATCGTCCAAGGTAACAATATTGAAATAGCAGAAGACTTTGGCATCAAAGTCGATGACCACATGCGCACATCGGTGTCGGGGGTGTACGCTGCGGGGGACGTGTGCACAGCCTCCTGGGAACCCAGTGCTCTCTGGCAGCAGATGAGGCTGTGGACACAGGCCAGGCAGATGGGCTGGTACGCAGCCAGATGCATGGCGGCTGACGCCCTGGGAGAGCCAATCGAGCTGGACTTCTGCTTCGAGCTCTTCTCACACATCACCAAGTTCTTCAACTACAAGGTGGTGCTACTGGGGAAATACAATGCCCAGGGCCTGGGCAGAGATCATGAACTGATGGTGCGCTGTACCAAGGGGATGGAGTACGTGAAGCTGGTACTGAGGGGAGGGCGCATGTTTACTCTCCTATCATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K24426 PYROXD1; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012632 True 1272 mRNA 0.52 12 557829 574372

Neighbor

gene id symbol gene type direction distance location
AMCG00012624 NA coding downstream 107253 420233 ~ 450576 (-)
AMCG00012623 NA coding downstream 259704 281594 ~ 298125 (-)
AMCG00012626 NA coding downstream 362228 152662 ~ 195601 (-)
AMCG00012625 NA coding downstream 409724 124039 ~ 148105 (-)
AMCG00012621 NA coding downstream 542420 8500 ~ 15409 (-)
AMCG00012631 NA coding upstream 14855 589227 ~ 590653 (-)
AMCG00012630 NA coding upstream 25483 599855 ~ 613207 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 170963 745335 ~ 751549 (-)
AMCG00012637 NA coding upstream 192633 767005 ~ 792382 (-)
AMCG00012638 NA coding upstream 225687 800059 ~ 816537 (-)
G38305 NA non-coding upstream 22236 596608 ~ 596818 (-)
G38355 NA non-coding upstream 262739 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1310257 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1326388 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1420475 1994847 ~ 1995063 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 18238 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 1004583 1578955 ~ 1817200 (-)
G38458 NA other upstream 1202482 1776854 ~ 1777221 (-)
G38490 NA other upstream 1609513 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5477992 6052364 ~ 6063817 (-)
G39487 NA other upstream 5881349 6455721 ~ 6456178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_00750525_00759434 RYROXD1, PYROXD1 coding CI01000019 null 750141 ~ 759844 (+)